| Motif | TWST2.H12INVITRO.1.P.D |
| Gene (human) | TWIST2 (GeneCards) |
| Gene synonyms (human) | BHLHA39, DERMO1 |
| Gene (mouse) | Twist2 |
| Gene synonyms (mouse) | Dermo1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | TWST2.H12INVITRO.1.P.D |
| Gene (human) | TWIST2 (GeneCards) |
| Gene synonyms (human) | BHLHA39, DERMO1 |
| Gene (mouse) | Twist2 |
| Gene synonyms (mouse) | Dermo1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 10 |
| Consensus | nSCAGMTGKb |
| GC content | 56.65% |
| Information content (bits; total / per base) | 11.905 / 1.191 |
| Data sources | ChIP-Seq |
| Aligned words | 995 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (13) | 0.924 | 0.938 | 0.835 | 0.861 | 0.877 | 0.893 | 2.926 | 3.002 | 280.854 | 333.886 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | TWIST {1.2.3.2} (TFClass) |
| TFClass ID | TFClass: 1.2.3.2.2 |
| HGNC | HGNC:20670 |
| MGI | MGI:104685 |
| EntrezGene (human) | GeneID:117581 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:13345 (SSTAR profile) |
| UniProt ID (human) | TWST2_HUMAN |
| UniProt ID (mouse) | TWST2_MOUSE |
| UniProt AC (human) | Q8WVJ9 (TFClass) |
| UniProt AC (mouse) | Q9D030 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | TWST2.H12INVITRO.1.P.D.pcm |
| PWM | TWST2.H12INVITRO.1.P.D.pwm |
| PFM | TWST2.H12INVITRO.1.P.D.pfm |
| Alignment | TWST2.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | TWST2.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | TWST2.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | TWST2.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | TWST2.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 272.0 | 131.0 | 309.0 | 283.0 |
| 02 | 144.0 | 630.0 | 213.0 | 8.0 |
| 03 | 3.0 | 992.0 | 0.0 | 0.0 |
| 04 | 987.0 | 1.0 | 3.0 | 4.0 |
| 05 | 0.0 | 93.0 | 891.0 | 11.0 |
| 06 | 629.0 | 356.0 | 5.0 | 5.0 |
| 07 | 1.0 | 5.0 | 2.0 | 987.0 |
| 08 | 0.0 | 0.0 | 995.0 | 0.0 |
| 09 | 11.0 | 111.0 | 283.0 | 590.0 |
| 10 | 43.0 | 165.0 | 452.0 | 335.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.273 | 0.132 | 0.311 | 0.284 |
| 02 | 0.145 | 0.633 | 0.214 | 0.008 |
| 03 | 0.003 | 0.997 | 0.0 | 0.0 |
| 04 | 0.992 | 0.001 | 0.003 | 0.004 |
| 05 | 0.0 | 0.093 | 0.895 | 0.011 |
| 06 | 0.632 | 0.358 | 0.005 | 0.005 |
| 07 | 0.001 | 0.005 | 0.002 | 0.992 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.011 | 0.112 | 0.284 | 0.593 |
| 10 | 0.043 | 0.166 | 0.454 | 0.337 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.089 | -0.635 | 0.216 | 0.128 |
| 02 | -0.542 | 0.925 | -0.154 | -3.249 |
| 03 | -3.97 | 1.378 | -4.978 | -4.978 |
| 04 | 1.373 | -4.521 | -3.97 | -3.778 |
| 05 | -4.978 | -0.972 | 1.271 | -2.98 |
| 06 | 0.924 | 0.356 | -3.617 | -3.617 |
| 07 | -4.521 | -3.617 | -4.208 | 1.373 |
| 08 | -4.978 | -4.978 | 1.381 | -4.978 |
| 09 | -2.98 | -0.798 | 0.128 | 0.86 |
| 10 | -1.723 | -0.407 | 0.594 | 0.296 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.611195 |
| 0.0005 | 4.89179 |
| 0.0001 | 7.794455 |