MotifTWST2.H12INVITRO.1.P.D
Gene (human)TWIST2
(GeneCards)
Gene synonyms (human)BHLHA39, DERMO1
Gene (mouse)Twist2
Gene synonyms (mouse)Dermo1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length10
ConsensusnSCAGMTGKb
GC content56.65%
Information content (bits; total / per base)11.905 / 1.191
Data sourcesChIP-Seq
Aligned words995

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (13) 0.924 0.938 0.835 0.861 0.877 0.893 2.926 3.002 280.854 333.886
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTWIST {1.2.3.2} (TFClass)
TFClass IDTFClass: 1.2.3.2.2
HGNCHGNC:20670
MGIMGI:104685
EntrezGene (human)GeneID:117581
(SSTAR profile)
EntrezGene (mouse)GeneID:13345
(SSTAR profile)
UniProt ID (human)TWST2_HUMAN
UniProt ID (mouse)TWST2_MOUSE
UniProt AC (human)Q8WVJ9
(TFClass)
UniProt AC (mouse)Q9D030
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01272.0131.0309.0283.0
02144.0630.0213.08.0
033.0992.00.00.0
04987.01.03.04.0
050.093.0891.011.0
06629.0356.05.05.0
071.05.02.0987.0
080.00.0995.00.0
0911.0111.0283.0590.0
1043.0165.0452.0335.0
PFM
ACGT
010.2730.1320.3110.284
020.1450.6330.2140.008
030.0030.9970.00.0
040.9920.0010.0030.004
050.00.0930.8950.011
060.6320.3580.0050.005
070.0010.0050.0020.992
080.00.01.00.0
090.0110.1120.2840.593
100.0430.1660.4540.337
PWM
ACGT
010.089-0.6350.2160.128
02-0.5420.925-0.154-3.249
03-3.971.378-4.978-4.978
041.373-4.521-3.97-3.778
05-4.978-0.9721.271-2.98
060.9240.356-3.617-3.617
07-4.521-3.617-4.2081.373
08-4.978-4.9781.381-4.978
09-2.98-0.7980.1280.86
10-1.723-0.4070.5940.296
Standard thresholds
P-value Threshold
0.001 3.611195
0.0005 4.89179
0.0001 7.794455