MotifTWST1.H12INVIVO.0.P.B
Gene (human)TWIST1
(GeneCards)
Gene synonyms (human)BHLHA38, TWIST
Gene (mouse)Twist1
Gene synonyms (mouse)Twist
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length18
ConsensusvCATCTGKhWbbvATYWd
GC content38.6%
Information content (bits; total / per base)16.773 / 0.932
Data sourcesChIP-Seq
Aligned words704

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (31) 0.917 0.961 0.892 0.946 0.916 0.965 5.428 6.056 478.31 717.62
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTWIST {1.2.3.2} (TFClass)
TFClass IDTFClass: 1.2.3.2.1
HGNCHGNC:12428
MGIMGI:98872
EntrezGene (human)GeneID:7291
(SSTAR profile)
EntrezGene (mouse)GeneID:22160
(SSTAR profile)
UniProt ID (human)TWST1_HUMAN
UniProt ID (mouse)TWST1_MOUSE
UniProt AC (human)Q15672
(TFClass)
UniProt AC (mouse)P26687
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01383.0150.0140.031.0
0226.0670.07.01.0
03684.03.08.09.0
043.027.0134.0540.0
0583.0569.048.04.0
062.00.00.0702.0
071.01.0697.05.0
089.079.0418.0198.0
09205.081.045.0373.0
10173.061.060.0410.0
1161.0221.081.0341.0
1247.0266.074.0317.0
13303.0265.083.053.0
14620.026.040.018.0
150.022.036.0646.0
1658.091.033.0522.0
17456.017.028.0203.0
18173.080.0331.0120.0
PFM
ACGT
010.5440.2130.1990.044
020.0370.9520.010.001
030.9720.0040.0110.013
040.0040.0380.190.767
050.1180.8080.0680.006
060.0030.00.00.997
070.0010.0010.990.007
080.0130.1120.5940.281
090.2910.1150.0640.53
100.2460.0870.0850.582
110.0870.3140.1150.484
120.0670.3780.1050.45
130.430.3760.1180.075
140.8810.0370.0570.026
150.00.0310.0510.918
160.0820.1290.0470.741
170.6480.0240.040.288
180.2460.1140.470.17
PWM
ACGT
010.773-0.158-0.226-1.694
02-1.8611.33-3.023-4.209
031.351-3.645-2.914-2.815
04-3.645-1.825-0.271.115
05-0.7411.167-1.275-3.45
06-3.888-4.686-4.6861.377
07-4.209-4.2091.369-3.287
08-2.815-0.790.860.117
090.151-0.765-1.3370.746
10-0.017-1.042-1.0580.84
11-1.0420.226-0.7650.657
12-1.2950.41-0.8540.584
130.5390.406-0.741-1.179
141.253-1.861-1.451-2.202
15-4.686-2.017-1.5521.294
16-1.091-0.651-1.6351.081
170.946-2.254-1.7910.141
18-0.017-0.7770.627-0.379
Standard thresholds
P-value Threshold
0.001 2.20051
0.0005 3.46506
0.0001 6.10676