MotifTRPS1.H12INVITRO.0.P.D
Gene (human)TRPS1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Trps1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length8
ConsensusvWGATARv
GC content36.14%
Information content (bits; total / per base)8.649 / 1.081
Data sourcesChIP-Seq
Aligned words395

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (32) 0.768 0.837 0.603 0.722 0.696 0.781 1.709 2.213 84.151 151.509
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classOther C4 zinc finger-type factors {2.2} (TFClass)
TF familyC4-GATA-related {2.2.1} (TFClass)
TF subfamilyGATA single {2.2.1.2} (TFClass)
TFClass IDTFClass: 2.2.1.2.13
HGNCHGNC:12340
MGIMGI:1927616
EntrezGene (human)GeneID:7227
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)TRPS1_HUMAN
UniProt ID (mouse)TRPS1_MOUSE
UniProt AC (human)Q9UHF7
(TFClass)
UniProt AC (mouse)Q925H1
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0170.0129.0152.044.0
02257.06.04.0128.0
030.00.0395.00.0
04392.02.00.01.0
056.03.01.0385.0
06296.02.07.090.0
07222.012.0113.048.0
0851.0128.0188.028.0
PFM
ACGT
010.1770.3270.3850.111
020.6510.0150.010.324
030.00.01.00.0
040.9920.0050.00.003
050.0150.0080.0030.975
060.7490.0050.0180.228
070.5620.030.2860.122
080.1290.3240.4760.071
PWM
ACGT
01-0.3380.2640.426-0.79
020.947-2.593-2.9040.256
03-4.206-4.2061.375-4.206
041.367-3.356-4.206-3.693
05-2.593-3.105-3.6931.35
061.088-3.356-2.468-0.091
070.802-2.0050.133-0.706
08-0.6470.2560.637-1.223
Standard thresholds
P-value Threshold
0.001 5.4301
0.0005 6.12787
0.0001 7.201445