| Motif | TRPS1.H12INVITRO.0.P.D |
| Gene (human) | TRPS1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Trps1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TRPS1.H12INVITRO.0.P.D |
| Gene (human) | TRPS1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Trps1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | vWGATARv |
| GC content | 36.14% |
| Information content (bits; total / per base) | 8.649 / 1.081 |
| Data sources | ChIP-Seq |
| Aligned words | 395 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (32) | 0.768 | 0.837 | 0.603 | 0.722 | 0.696 | 0.781 | 1.709 | 2.213 | 84.151 | 151.509 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Other C4 zinc finger-type factors {2.2} (TFClass) |
| TF family | C4-GATA-related {2.2.1} (TFClass) |
| TF subfamily | GATA single {2.2.1.2} (TFClass) |
| TFClass ID | TFClass: 2.2.1.2.13 |
| HGNC | HGNC:12340 |
| MGI | MGI:1927616 |
| EntrezGene (human) | GeneID:7227 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | TRPS1_HUMAN |
| UniProt ID (mouse) | TRPS1_MOUSE |
| UniProt AC (human) | Q9UHF7 (TFClass) |
| UniProt AC (mouse) | Q925H1 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | TRPS1.H12INVITRO.0.P.D.pcm |
| PWM | TRPS1.H12INVITRO.0.P.D.pwm |
| PFM | TRPS1.H12INVITRO.0.P.D.pfm |
| Alignment | TRPS1.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | TRPS1.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | TRPS1.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | TRPS1.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | TRPS1.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 70.0 | 129.0 | 152.0 | 44.0 |
| 02 | 257.0 | 6.0 | 4.0 | 128.0 |
| 03 | 0.0 | 0.0 | 395.0 | 0.0 |
| 04 | 392.0 | 2.0 | 0.0 | 1.0 |
| 05 | 6.0 | 3.0 | 1.0 | 385.0 |
| 06 | 296.0 | 2.0 | 7.0 | 90.0 |
| 07 | 222.0 | 12.0 | 113.0 | 48.0 |
| 08 | 51.0 | 128.0 | 188.0 | 28.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.177 | 0.327 | 0.385 | 0.111 |
| 02 | 0.651 | 0.015 | 0.01 | 0.324 |
| 03 | 0.0 | 0.0 | 1.0 | 0.0 |
| 04 | 0.992 | 0.005 | 0.0 | 0.003 |
| 05 | 0.015 | 0.008 | 0.003 | 0.975 |
| 06 | 0.749 | 0.005 | 0.018 | 0.228 |
| 07 | 0.562 | 0.03 | 0.286 | 0.122 |
| 08 | 0.129 | 0.324 | 0.476 | 0.071 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.338 | 0.264 | 0.426 | -0.79 |
| 02 | 0.947 | -2.593 | -2.904 | 0.256 |
| 03 | -4.206 | -4.206 | 1.375 | -4.206 |
| 04 | 1.367 | -3.356 | -4.206 | -3.693 |
| 05 | -2.593 | -3.105 | -3.693 | 1.35 |
| 06 | 1.088 | -3.356 | -2.468 | -0.091 |
| 07 | 0.802 | -2.005 | 0.133 | -0.706 |
| 08 | -0.647 | 0.256 | 0.637 | -1.223 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.4301 |
| 0.0005 | 6.12787 |
| 0.0001 | 7.201445 |