MotifTGIF1.H12INVITRO.1.S.B
Gene (human)TGIF1
(GeneCards)
Gene synonyms (human)TGIF
Gene (mouse)Tgif1
Gene synonyms (mouse)Tgif
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length17
ConsensusnnhTGACAGvTKYYRnn
GC content45.36%
Information content (bits; total / per base)15.572 / 0.916
Data sourcesHT-SELEX
Aligned words511

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (17) 0.81 0.877 0.655 0.743 0.767 0.853 2.258 3.006 111.569 306.678

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.723 0.696 0.678 0.651 0.623 0.609
best 0.962 0.942 0.941 0.912 0.881 0.855
Methyl HT-SELEX, 1 experiments median 0.868 0.821 0.815 0.763 0.722 0.695
best 0.868 0.821 0.815 0.763 0.722 0.695
Non-Methyl HT-SELEX, 3 experiments median 0.579 0.571 0.541 0.539 0.523 0.524
best 0.962 0.942 0.941 0.912 0.881 0.855
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyTGIF {3.1.4.6} (TFClass)
TFClass IDTFClass: 3.1.4.6.1
HGNCHGNC:11776
MGIMGI:1194497
EntrezGene (human)GeneID:7050
(SSTAR profile)
EntrezGene (mouse)GeneID:21815
(SSTAR profile)
UniProt ID (human)TGIF1_HUMAN
UniProt ID (mouse)TGIF1_MOUSE
UniProt AC (human)Q15583
(TFClass)
UniProt AC (mouse)P70284
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
01156.2597.25121.25136.25
02155.073.0143.0140.0
03166.0110.057.0178.0
040.00.00.0511.0
050.00.0511.00.0
06494.00.00.017.0
070.0511.00.00.0
08511.00.00.00.0
096.011.0440.054.0
1078.0227.0169.037.0
1119.056.026.0410.0
1250.027.0380.054.0
1343.044.030.0394.0
1441.0347.051.072.0
15360.026.063.062.0
16152.0151.056.0152.0
17171.75110.75101.75126.75
PFM
ACGT
010.3060.190.2370.267
020.3030.1430.280.274
030.3250.2150.1120.348
040.00.00.01.0
050.00.01.00.0
060.9670.00.00.033
070.01.00.00.0
081.00.00.00.0
090.0120.0220.8610.106
100.1530.4440.3310.072
110.0370.110.0510.802
120.0980.0530.7440.106
130.0840.0860.0590.771
140.080.6790.10.141
150.7050.0510.1230.121
160.2970.2950.110.297
170.3360.2170.1990.248
PWM
ACGT
010.199-0.269-0.0520.064
020.191-0.5510.1110.091
030.259-0.148-0.7920.328
04-4.418-4.418-4.4181.377
05-4.418-4.4181.377-4.418
061.343-4.418-4.418-1.941
07-4.4181.377-4.418-4.418
081.377-4.418-4.418-4.418
09-2.839-2.3321.228-0.845
10-0.4860.570.277-1.21
11-1.839-0.809-1.5461.158
12-0.919-1.511.082-0.845
13-1.065-1.043-1.411.118
14-1.1110.992-0.9-0.564
151.028-1.546-0.695-0.71
160.1720.165-0.8090.172
170.293-0.141-0.224-0.008
Standard thresholds
P-value Threshold
0.001 2.46041
0.0005 3.78526
0.0001 6.51576