MotifTGIF1.H12INVITRO.0.PSM.A
Gene (human)TGIF1
(GeneCards)
Gene synonyms (human)TGIF
Gene (mouse)Tgif1
Gene synonyms (mouse)Tgif
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length8
ConsensusTGACASnn
GC content51.02%
Information content (bits; total / per base)8.643 / 1.08
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words1020

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (17) 0.842 0.914 0.697 0.822 0.818 0.891 2.284 2.82 171.62 443.77

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.754 0.729 0.701 0.68 0.637 0.629
best 0.982 0.973 0.958 0.941 0.904 0.884
Methyl HT-SELEX, 1 experiments median 0.915 0.876 0.861 0.817 0.755 0.734
best 0.915 0.876 0.861 0.817 0.755 0.734
Non-Methyl HT-SELEX, 3 experiments median 0.594 0.581 0.542 0.543 0.519 0.525
best 0.982 0.973 0.958 0.941 0.904 0.884
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyTGIF {3.1.4.6} (TFClass)
TFClass IDTFClass: 3.1.4.6.1
HGNCHGNC:11776
MGIMGI:1194497
EntrezGene (human)GeneID:7050
(SSTAR profile)
EntrezGene (mouse)GeneID:21815
(SSTAR profile)
UniProt ID (human)TGIF1_HUMAN
UniProt ID (mouse)TGIF1_MOUSE
UniProt AC (human)Q15583
(TFClass)
UniProt AC (mouse)P70284
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
0155.017.029.0919.0
022.022.0995.01.0
03931.06.079.04.0
0411.0984.021.04.0
05950.010.032.028.0
06108.0157.0665.090.0
07174.0380.0268.0198.0
08177.0270.0228.0345.0
PFM
ACGT
010.0540.0170.0280.901
020.0020.0220.9750.001
030.9130.0060.0770.004
040.0110.9650.0210.004
050.9310.010.0310.027
060.1060.1540.6520.088
070.1710.3730.2630.194
080.1740.2650.2240.338
PWM
ACGT
01-1.51-2.618-2.1231.277
02-4.231-2.3811.356-4.543
031.29-3.503-1.157-3.802
04-3.0041.345-2.424-3.802
051.31-3.086-2.03-2.156
06-0.85-0.4810.954-1.029
07-0.3790.3970.049-0.251
08-0.3620.057-0.1110.301
Standard thresholds
P-value Threshold
0.001 5.16528
0.0005 5.871625
0.0001 7.525915