| Motif | TGIF1.H12INVITRO.0.PSM.A |
| Gene (human) | TGIF1 (GeneCards) |
| Gene synonyms (human) | TGIF |
| Gene (mouse) | Tgif1 |
| Gene synonyms (mouse) | Tgif |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TGIF1.H12INVITRO.0.PSM.A |
| Gene (human) | TGIF1 (GeneCards) |
| Gene synonyms (human) | TGIF |
| Gene (mouse) | Tgif1 |
| Gene synonyms (mouse) | Tgif |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 8 |
| Consensus | TGACASnn |
| GC content | 51.02% |
| Information content (bits; total / per base) | 8.643 / 1.08 |
| Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 1020 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 3 (17) | 0.842 | 0.914 | 0.697 | 0.822 | 0.818 | 0.891 | 2.284 | 2.82 | 171.62 | 443.77 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.754 | 0.729 | 0.701 | 0.68 | 0.637 | 0.629 |
| best | 0.982 | 0.973 | 0.958 | 0.941 | 0.904 | 0.884 | |
| Methyl HT-SELEX, 1 experiments | median | 0.915 | 0.876 | 0.861 | 0.817 | 0.755 | 0.734 |
| best | 0.915 | 0.876 | 0.861 | 0.817 | 0.755 | 0.734 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.594 | 0.581 | 0.542 | 0.543 | 0.519 | 0.525 |
| best | 0.982 | 0.973 | 0.958 | 0.941 | 0.904 | 0.884 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | TGIF {3.1.4.6} (TFClass) |
| TFClass ID | TFClass: 3.1.4.6.1 |
| HGNC | HGNC:11776 |
| MGI | MGI:1194497 |
| EntrezGene (human) | GeneID:7050 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:21815 (SSTAR profile) |
| UniProt ID (human) | TGIF1_HUMAN |
| UniProt ID (mouse) | TGIF1_MOUSE |
| UniProt AC (human) | Q15583 (TFClass) |
| UniProt AC (mouse) | P70284 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 3 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | TGIF1.H12INVITRO.0.PSM.A.pcm |
| PWM | TGIF1.H12INVITRO.0.PSM.A.pwm |
| PFM | TGIF1.H12INVITRO.0.PSM.A.pfm |
| Alignment | TGIF1.H12INVITRO.0.PSM.A.words.tsv |
| Threshold to P-value map | TGIF1.H12INVITRO.0.PSM.A.thr |
| Motif in other formats | |
| JASPAR format | TGIF1.H12INVITRO.0.PSM.A_jaspar_format.txt |
| MEME format | TGIF1.H12INVITRO.0.PSM.A_meme_format.meme |
| Transfac format | TGIF1.H12INVITRO.0.PSM.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 55.0 | 17.0 | 29.0 | 919.0 |
| 02 | 2.0 | 22.0 | 995.0 | 1.0 |
| 03 | 931.0 | 6.0 | 79.0 | 4.0 |
| 04 | 11.0 | 984.0 | 21.0 | 4.0 |
| 05 | 950.0 | 10.0 | 32.0 | 28.0 |
| 06 | 108.0 | 157.0 | 665.0 | 90.0 |
| 07 | 174.0 | 380.0 | 268.0 | 198.0 |
| 08 | 177.0 | 270.0 | 228.0 | 345.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.054 | 0.017 | 0.028 | 0.901 |
| 02 | 0.002 | 0.022 | 0.975 | 0.001 |
| 03 | 0.913 | 0.006 | 0.077 | 0.004 |
| 04 | 0.011 | 0.965 | 0.021 | 0.004 |
| 05 | 0.931 | 0.01 | 0.031 | 0.027 |
| 06 | 0.106 | 0.154 | 0.652 | 0.088 |
| 07 | 0.171 | 0.373 | 0.263 | 0.194 |
| 08 | 0.174 | 0.265 | 0.224 | 0.338 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.51 | -2.618 | -2.123 | 1.277 |
| 02 | -4.231 | -2.381 | 1.356 | -4.543 |
| 03 | 1.29 | -3.503 | -1.157 | -3.802 |
| 04 | -3.004 | 1.345 | -2.424 | -3.802 |
| 05 | 1.31 | -3.086 | -2.03 | -2.156 |
| 06 | -0.85 | -0.481 | 0.954 | -1.029 |
| 07 | -0.379 | 0.397 | 0.049 | -0.251 |
| 08 | -0.362 | 0.057 | -0.111 | 0.301 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.16528 |
| 0.0005 | 5.871625 |
| 0.0001 | 7.525915 |