MotifTFEC.H12INVIVO.0.M.D
Gene (human)TFEC
(GeneCards)
Gene synonyms (human)BHLHE34, TCFEC, TFECL
Gene (mouse)Tfec
Gene synonyms (mouse)Tcfec
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusndvGTCACGTGAYn
GC content51.88%
Information content (bits; total / per base)16.701 / 1.193
Data sourcesMethyl-HT-SELEX
Aligned words9648

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 1.0 0.999 0.999 0.999 0.968 0.97
best 1.0 0.999 1.0 0.999 0.997 0.996
Methyl HT-SELEX, 2 experiments median 1.0 0.999 0.999 0.999 0.969 0.971
best 1.0 0.999 1.0 0.999 0.997 0.996
Non-Methyl HT-SELEX, 2 experiments median 0.999 0.998 0.998 0.997 0.968 0.969
best 1.0 0.999 0.999 0.998 0.995 0.993

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.853 0.601 0.831 0.638
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyTFE3 {1.2.6.1} (TFClass)
TFClass IDTFClass: 1.2.6.1.3
HGNCHGNC:11754
MGIMGI:1333760
EntrezGene (human)GeneID:22797
(SSTAR profile)
EntrezGene (mouse)GeneID:21426
(SSTAR profile)
UniProt ID (human)TFEC_HUMAN
UniProt ID (mouse)TFEC_MOUSE
UniProt AC (human)O14948
(TFClass)
UniProt AC (mouse)Q9WTW4
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
012264.02526.02790.02068.0
023480.251125.252933.252109.25
032303.01684.04651.01010.0
041270.03.08368.07.0
050.03.015.09630.0
060.09648.00.00.0
079647.01.00.00.0
080.08099.020.01529.0
09977.01.08670.00.0
107.01.01.09639.0
111.01.09645.01.0
128740.0324.0406.0178.0
13118.03452.0644.05434.0
142311.51802.53265.52268.5
PFM
ACGT
010.2350.2620.2890.214
020.3610.1170.3040.219
030.2390.1750.4820.105
040.1320.00.8670.001
050.00.00.0020.998
060.01.00.00.0
071.00.00.00.0
080.00.8390.0020.158
090.1010.00.8990.0
100.0010.00.00.999
110.00.01.00.0
120.9060.0340.0420.018
130.0120.3580.0670.563
140.240.1870.3380.235
PWM
ACGT
01-0.0630.0460.145-0.154
020.366-0.7610.195-0.134
03-0.046-0.3590.656-0.869
04-0.641-6.1231.243-5.56
05-6.959-6.123-4.9391.384
06-6.9591.386-6.959-6.959
071.385-6.597-6.959-6.959
08-6.9591.211-4.685-0.455
09-0.902-6.5971.279-6.959
10-5.56-6.597-6.5971.385
11-6.597-6.5971.385-6.597
121.287-2.001-1.777-2.595
13-2.9990.358-1.3180.812
14-0.043-0.2910.303-0.061
Standard thresholds
P-value Threshold
0.001 -1.37504
0.0005 0.55286
0.0001 4.52117