Motif | TFEC.H12CORE.1.SM.B |
Gene (human) | TFEC (GeneCards) |
Gene synonyms (human) | BHLHE34, TCFEC, TFECL |
Gene (mouse) | Tfec |
Gene synonyms (mouse) | Tcfec |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | TFEC.H12CORE.1.SM.B |
Gene (human) | TFEC (GeneCards) |
Gene synonyms (human) | BHLHE34, TCFEC, TFECL |
Gene (mouse) | Tfec |
Gene synonyms (mouse) | Tcfec |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 13 |
Consensus | nnRGTCACGTGAY |
GC content | 51.91% |
Information content (bits; total / per base) | 17.939 / 1.38 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9113 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 1.0 | 0.999 | 0.998 | 0.997 | 0.996 | 0.995 |
best | 1.0 | 0.999 | 1.0 | 0.999 | 1.0 | 0.999 | |
Methyl HT-SELEX, 2 experiments | median | 1.0 | 0.999 | 0.997 | 0.996 | 0.994 | 0.992 |
best | 1.0 | 0.999 | 0.997 | 0.996 | 0.996 | 0.994 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.999 | 0.998 | 0.999 | 0.998 | 0.998 | 0.997 |
best | 1.0 | 0.999 | 1.0 | 0.999 | 1.0 | 0.999 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.9 | 0.772 | 0.888 | 0.674 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | bHLH-ZIP {1.2.6} (TFClass) |
TF subfamily | TFE3 {1.2.6.1} (TFClass) |
TFClass ID | TFClass: 1.2.6.1.3 |
HGNC | HGNC:11754 |
MGI | MGI:1333760 |
EntrezGene (human) | GeneID:22797 (SSTAR profile) |
EntrezGene (mouse) | GeneID:21426 (SSTAR profile) |
UniProt ID (human) | TFEC_HUMAN |
UniProt ID (mouse) | TFEC_MOUSE |
UniProt AC (human) | O14948 (TFClass) |
UniProt AC (mouse) | Q9WTW4 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | TFEC.H12CORE.1.SM.B.pcm |
PWM | TFEC.H12CORE.1.SM.B.pwm |
PFM | TFEC.H12CORE.1.SM.B.pfm |
Alignment | TFEC.H12CORE.1.SM.B.words.tsv |
Threshold to P-value map | TFEC.H12CORE.1.SM.B.thr |
Motif in other formats | |
JASPAR format | TFEC.H12CORE.1.SM.B_jaspar_format.txt |
MEME format | TFEC.H12CORE.1.SM.B_meme_format.meme |
Transfac format | TFEC.H12CORE.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2028.5 | 2201.5 | 2591.5 | 2291.5 |
02 | 2953.75 | 1290.75 | 2359.75 | 2508.75 |
03 | 3104.0 | 346.0 | 4737.0 | 926.0 |
04 | 2258.0 | 2.0 | 6853.0 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 9113.0 |
06 | 0.0 | 9113.0 | 0.0 | 0.0 |
07 | 9113.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 9113.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 9113.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 9113.0 |
11 | 0.0 | 0.0 | 9113.0 | 0.0 |
12 | 8566.25 | 245.25 | 223.25 | 78.25 |
13 | 158.25 | 3651.25 | 549.25 | 4754.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.223 | 0.242 | 0.284 | 0.251 |
02 | 0.324 | 0.142 | 0.259 | 0.275 |
03 | 0.341 | 0.038 | 0.52 | 0.102 |
04 | 0.248 | 0.0 | 0.752 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 0.0 | 1.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 1.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 1.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 1.0 |
11 | 0.0 | 0.0 | 1.0 | 0.0 |
12 | 0.94 | 0.027 | 0.024 | 0.009 |
13 | 0.017 | 0.401 | 0.06 | 0.522 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.116 | -0.034 | 0.129 | 0.006 |
02 | 0.259 | -0.567 | 0.035 | 0.096 |
03 | 0.309 | -1.879 | 0.731 | -0.899 |
04 | -0.009 | -6.278 | 1.101 | -6.908 |
05 | -6.908 | -6.908 | -6.908 | 1.386 |
06 | -6.908 | 1.386 | -6.908 | -6.908 |
07 | 1.386 | -6.908 | -6.908 | -6.908 |
08 | -6.908 | 1.386 | -6.908 | -6.908 |
09 | -6.908 | -6.908 | 1.386 | -6.908 |
10 | -6.908 | -6.908 | -6.908 | 1.386 |
11 | -6.908 | -6.908 | 1.386 | -6.908 |
12 | 1.324 | -2.221 | -2.314 | -3.344 |
13 | -2.654 | 0.471 | -1.419 | 0.735 |
P-value | Threshold |
---|---|
0.001 | -4.475705 |
0.0005 | -2.18756 |
0.0001 | 2.63333 |