MotifTFEC.H12CORE.1.SM.B
Gene (human)TFEC
(GeneCards)
Gene synonyms (human)BHLHE34, TCFEC, TFECL
Gene (mouse)Tfec
Gene synonyms (mouse)Tcfec
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length13
ConsensusnnRGTCACGTGAY
GC content51.91%
Information content (bits; total / per base)17.939 / 1.38
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9113

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 1.0 0.999 0.998 0.997 0.996 0.995
best 1.0 0.999 1.0 0.999 1.0 0.999
Methyl HT-SELEX, 2 experiments median 1.0 0.999 0.997 0.996 0.994 0.992
best 1.0 0.999 0.997 0.996 0.996 0.994
Non-Methyl HT-SELEX, 2 experiments median 0.999 0.998 0.999 0.998 0.998 0.997
best 1.0 0.999 1.0 0.999 1.0 0.999

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.9 0.772 0.888 0.674
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyTFE3 {1.2.6.1} (TFClass)
TFClass IDTFClass: 1.2.6.1.3
HGNCHGNC:11754
MGIMGI:1333760
EntrezGene (human)GeneID:22797
(SSTAR profile)
EntrezGene (mouse)GeneID:21426
(SSTAR profile)
UniProt ID (human)TFEC_HUMAN
UniProt ID (mouse)TFEC_MOUSE
UniProt AC (human)O14948
(TFClass)
UniProt AC (mouse)Q9WTW4
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
012028.52201.52591.52291.5
022953.751290.752359.752508.75
033104.0346.04737.0926.0
042258.02.06853.00.0
050.00.00.09113.0
060.09113.00.00.0
079113.00.00.00.0
080.09113.00.00.0
090.00.09113.00.0
100.00.00.09113.0
110.00.09113.00.0
128566.25245.25223.2578.25
13158.253651.25549.254754.25
PFM
ACGT
010.2230.2420.2840.251
020.3240.1420.2590.275
030.3410.0380.520.102
040.2480.00.7520.0
050.00.00.01.0
060.01.00.00.0
071.00.00.00.0
080.01.00.00.0
090.00.01.00.0
100.00.00.01.0
110.00.01.00.0
120.940.0270.0240.009
130.0170.4010.060.522
PWM
ACGT
01-0.116-0.0340.1290.006
020.259-0.5670.0350.096
030.309-1.8790.731-0.899
04-0.009-6.2781.101-6.908
05-6.908-6.908-6.9081.386
06-6.9081.386-6.908-6.908
071.386-6.908-6.908-6.908
08-6.9081.386-6.908-6.908
09-6.908-6.9081.386-6.908
10-6.908-6.908-6.9081.386
11-6.908-6.9081.386-6.908
121.324-2.221-2.314-3.344
13-2.6540.471-1.4190.735
Standard thresholds
P-value Threshold
0.001 -4.475705
0.0005 -2.18756
0.0001 2.63333