MotifTFDP1.H12INVIVO.0.P.B
Gene (human)TFDP1
(GeneCards)
Gene synonyms (human)DP1
Gene (mouse)Tfdp1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusnbSGCGGGRvv
GC content72.75%
Information content (bits; total / per base)9.267 / 0.842
Data sourcesChIP-Seq
Aligned words992

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (26) 0.793 0.861 0.639 0.724 0.786 0.88 2.508 3.002 93.569 179.387
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyE2F {3.3.2} (TFClass)
TF subfamilyDP1 {3.3.2.2} (TFClass)
TFClass IDTFClass: 3.3.2.2.1
HGNCHGNC:11749
MGIMGI:101934
EntrezGene (human)GeneID:7027
(SSTAR profile)
EntrezGene (mouse)GeneID:21781
(SSTAR profile)
UniProt ID (human)TFDP1_HUMAN
UniProt ID (mouse)TFDP1_MOUSE
UniProt AC (human)Q14186
(TFClass)
UniProt AC (mouse)Q08639
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01274.0186.0334.0198.0
02136.0139.0551.0166.0
03102.0232.0651.07.0
044.049.0931.08.0
0546.0925.03.018.0
0638.012.0924.018.0
0716.0171.0798.07.0
0873.083.0815.021.0
09717.088.0143.044.0
10551.0129.0253.059.0
11345.0231.0290.0126.0
PFM
ACGT
010.2760.1880.3370.2
020.1370.140.5550.167
030.1030.2340.6560.007
040.0040.0490.9390.008
050.0460.9320.0030.018
060.0380.0120.9310.018
070.0160.1720.8040.007
080.0740.0840.8220.021
090.7230.0890.1440.044
100.5550.130.2550.059
110.3480.2330.2920.127
PWM
ACGT
010.099-0.2850.296-0.223
02-0.595-0.5740.795-0.398
03-0.879-0.0660.961-3.354
04-3.776-1.5941.318-3.246
05-1.6551.311-3.968-2.538
06-1.838-2.9011.31-2.538
07-2.645-0.3691.164-3.354
08-1.207-1.0811.185-2.397
091.057-1.024-0.546-1.698
100.795-0.6470.02-1.414
110.328-0.0710.155-0.67
Standard thresholds
P-value Threshold
0.001 4.88837
0.0005 5.6875
0.0001 7.292205