| Motif | TFCP2.H12INVIVO.0.SM.D |
| Gene (human) | TFCP2 (GeneCards) |
| Gene synonyms (human) | LSF, SEF |
| Gene (mouse) | Tfcp2 |
| Gene synonyms (mouse) | Tcfcp2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TFCP2.H12INVIVO.0.SM.D |
| Gene (human) | TFCP2 (GeneCards) |
| Gene synonyms (human) | LSF, SEF |
| Gene (mouse) | Tfcp2 |
| Gene synonyms (mouse) | Tcfcp2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 26 |
| Consensus | YhdRhhndRWCYRGWYhdWWCCGGWW |
| GC content | 51.27% |
| Information content (bits; total / per base) | 19.764 / 0.76 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 2474 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 5 experiments | median | 0.995 | 0.992 | 0.985 | 0.979 | 0.947 | 0.936 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 | |
| Methyl HT-SELEX, 2 experiments | median | 0.997 | 0.996 | 0.992 | 0.989 | 0.973 | 0.967 |
| best | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 | 0.998 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.978 | 0.975 | 0.795 | 0.811 | 0.643 | 0.683 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.944 | 0.854 | 0.92 | 0.631 |
| batch 2 | 0.749 | 0.234 | 0.801 | 0.541 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Grainyhead domain factors {6.7} (TFClass) |
| TF family | CP2-related {6.7.2} (TFClass) |
| TF subfamily | {6.7.2.0} (TFClass) |
| TFClass ID | TFClass: 6.7.2.0.1 |
| HGNC | HGNC:11748 |
| MGI | MGI:98509 |
| EntrezGene (human) | GeneID:7024 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:21422 (SSTAR profile) |
| UniProt ID (human) | TFCP2_HUMAN |
| UniProt ID (mouse) | TFCP2_MOUSE |
| UniProt AC (human) | Q12800 (TFClass) |
| UniProt AC (mouse) | Q9ERA0 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 2 |
| PCM | TFCP2.H12INVIVO.0.SM.D.pcm |
| PWM | TFCP2.H12INVIVO.0.SM.D.pwm |
| PFM | TFCP2.H12INVIVO.0.SM.D.pfm |
| Alignment | TFCP2.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | TFCP2.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | TFCP2.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | TFCP2.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | TFCP2.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 179.5 | 1634.5 | 321.5 | 338.5 |
| 02 | 265.75 | 1303.75 | 212.75 | 691.75 |
| 03 | 770.0 | 243.0 | 1174.0 | 287.0 |
| 04 | 250.0 | 234.0 | 1814.0 | 176.0 |
| 05 | 547.0 | 606.0 | 245.0 | 1076.0 |
| 06 | 369.0 | 590.0 | 243.0 | 1272.0 |
| 07 | 514.0 | 637.0 | 478.0 | 845.0 |
| 08 | 912.0 | 303.0 | 848.0 | 411.0 |
| 09 | 1622.0 | 89.0 | 406.0 | 357.0 |
| 10 | 1369.0 | 48.0 | 297.0 | 760.0 |
| 11 | 4.0 | 2326.0 | 114.0 | 30.0 |
| 12 | 77.0 | 1801.0 | 10.0 | 586.0 |
| 13 | 720.0 | 30.0 | 1665.0 | 59.0 |
| 14 | 26.0 | 73.0 | 2375.0 | 0.0 |
| 15 | 485.0 | 382.0 | 27.0 | 1580.0 |
| 16 | 292.0 | 328.0 | 106.0 | 1748.0 |
| 17 | 442.0 | 689.0 | 336.0 | 1007.0 |
| 18 | 1165.0 | 271.0 | 691.0 | 347.0 |
| 19 | 1838.0 | 52.0 | 267.0 | 317.0 |
| 20 | 1704.0 | 4.0 | 150.0 | 616.0 |
| 21 | 0.0 | 2456.0 | 17.0 | 1.0 |
| 22 | 16.0 | 1971.0 | 6.0 | 481.0 |
| 23 | 521.0 | 5.0 | 1928.0 | 20.0 |
| 24 | 1.0 | 26.0 | 2447.0 | 0.0 |
| 25 | 635.0 | 184.0 | 17.0 | 1638.0 |
| 26 | 458.75 | 339.75 | 156.75 | 1518.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.073 | 0.661 | 0.13 | 0.137 |
| 02 | 0.107 | 0.527 | 0.086 | 0.28 |
| 03 | 0.311 | 0.098 | 0.475 | 0.116 |
| 04 | 0.101 | 0.095 | 0.733 | 0.071 |
| 05 | 0.221 | 0.245 | 0.099 | 0.435 |
| 06 | 0.149 | 0.238 | 0.098 | 0.514 |
| 07 | 0.208 | 0.257 | 0.193 | 0.342 |
| 08 | 0.369 | 0.122 | 0.343 | 0.166 |
| 09 | 0.656 | 0.036 | 0.164 | 0.144 |
| 10 | 0.553 | 0.019 | 0.12 | 0.307 |
| 11 | 0.002 | 0.94 | 0.046 | 0.012 |
| 12 | 0.031 | 0.728 | 0.004 | 0.237 |
| 13 | 0.291 | 0.012 | 0.673 | 0.024 |
| 14 | 0.011 | 0.03 | 0.96 | 0.0 |
| 15 | 0.196 | 0.154 | 0.011 | 0.639 |
| 16 | 0.118 | 0.133 | 0.043 | 0.707 |
| 17 | 0.179 | 0.278 | 0.136 | 0.407 |
| 18 | 0.471 | 0.11 | 0.279 | 0.14 |
| 19 | 0.743 | 0.021 | 0.108 | 0.128 |
| 20 | 0.689 | 0.002 | 0.061 | 0.249 |
| 21 | 0.0 | 0.993 | 0.007 | 0.0 |
| 22 | 0.006 | 0.797 | 0.002 | 0.194 |
| 23 | 0.211 | 0.002 | 0.779 | 0.008 |
| 24 | 0.0 | 0.011 | 0.989 | 0.0 |
| 25 | 0.257 | 0.074 | 0.007 | 0.662 |
| 26 | 0.185 | 0.137 | 0.063 | 0.614 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.229 | 0.97 | -0.651 | -0.6 |
| 02 | -0.841 | 0.744 | -1.061 | 0.112 |
| 03 | 0.218 | -0.929 | 0.639 | -0.764 |
| 04 | -0.901 | -0.967 | 1.074 | -1.249 |
| 05 | -0.122 | -0.02 | -0.921 | 0.552 |
| 06 | -0.514 | -0.047 | -0.929 | 0.719 |
| 07 | -0.184 | 0.029 | -0.257 | 0.311 |
| 08 | 0.387 | -0.71 | 0.315 | -0.407 |
| 09 | 0.962 | -1.92 | -0.419 | -0.547 |
| 10 | 0.793 | -2.519 | -0.73 | 0.205 |
| 11 | -4.646 | 1.322 | -1.677 | -2.966 |
| 12 | -2.062 | 1.067 | -3.949 | -0.054 |
| 13 | 0.152 | -2.966 | 0.988 | -2.32 |
| 14 | -3.1 | -2.114 | 1.343 | -5.761 |
| 15 | -0.242 | -0.48 | -3.065 | 0.936 |
| 16 | -0.747 | -0.631 | -1.749 | 1.037 |
| 17 | -0.335 | 0.108 | -0.608 | 0.486 |
| 18 | 0.632 | -0.821 | 0.111 | -0.576 |
| 19 | 1.087 | -2.442 | -0.836 | -0.665 |
| 20 | 1.011 | -4.646 | -1.407 | -0.004 |
| 21 | -5.761 | 1.377 | -3.488 | -5.347 |
| 22 | -3.543 | 1.157 | -4.357 | -0.251 |
| 23 | -0.171 | -4.491 | 1.135 | -3.342 |
| 24 | -5.347 | -3.1 | 1.373 | -5.761 |
| 25 | 0.026 | -1.205 | -3.488 | 0.972 |
| 26 | -0.298 | -0.597 | -1.363 | 0.896 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.39746 |
| 0.0005 | 1.86386 |
| 0.0001 | 4.92331 |