| Motif | TFCP2.H12INVITRO.0.SM.B |
| Gene (human) | TFCP2 (GeneCards) |
| Gene synonyms (human) | LSF, SEF |
| Gene (mouse) | Tfcp2 |
| Gene synonyms (mouse) | Tcfcp2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | TFCP2.H12INVITRO.0.SM.B |
| Gene (human) | TFCP2 (GeneCards) |
| Gene synonyms (human) | LSF, SEF |
| Gene (mouse) | Tfcp2 |
| Gene synonyms (mouse) | Tcfcp2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 26 |
| Consensus | ShdShhndWWCYRGWYhdWWCCGGWh |
| GC content | 51.53% |
| Information content (bits; total / per base) | 18.273 / 0.703 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9900 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 5 experiments | median | 0.995 | 0.993 | 0.985 | 0.979 | 0.947 | 0.936 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 | |
| Methyl HT-SELEX, 2 experiments | median | 0.997 | 0.996 | 0.992 | 0.989 | 0.973 | 0.967 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.979 | 0.976 | 0.795 | 0.811 | 0.643 | 0.683 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.999 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.936 | 0.836 | 0.914 | 0.629 |
| batch 2 | 0.742 | 0.216 | 0.795 | 0.545 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Grainyhead domain factors {6.7} (TFClass) |
| TF family | CP2-related {6.7.2} (TFClass) |
| TF subfamily | {6.7.2.0} (TFClass) |
| TFClass ID | TFClass: 6.7.2.0.1 |
| HGNC | HGNC:11748 |
| MGI | MGI:98509 |
| EntrezGene (human) | GeneID:7024 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:21422 (SSTAR profile) |
| UniProt ID (human) | TFCP2_HUMAN |
| UniProt ID (mouse) | TFCP2_MOUSE |
| UniProt AC (human) | Q12800 (TFClass) |
| UniProt AC (mouse) | Q9ERA0 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 2 |
| PCM | TFCP2.H12INVITRO.0.SM.B.pcm |
| PWM | TFCP2.H12INVITRO.0.SM.B.pwm |
| PFM | TFCP2.H12INVITRO.0.SM.B.pfm |
| Alignment | TFCP2.H12INVITRO.0.SM.B.words.tsv |
| Threshold to P-value map | TFCP2.H12INVITRO.0.SM.B.thr |
| Motif in other formats | |
| JASPAR format | TFCP2.H12INVITRO.0.SM.B_jaspar_format.txt |
| MEME format | TFCP2.H12INVITRO.0.SM.B_meme_format.meme |
| Transfac format | TFCP2.H12INVITRO.0.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 688.5 | 6506.5 | 1430.5 | 1274.5 |
| 02 | 1098.5 | 5015.5 | 938.5 | 2847.5 |
| 03 | 3026.0 | 1021.0 | 4691.0 | 1162.0 |
| 04 | 895.0 | 1081.0 | 7302.0 | 622.0 |
| 05 | 2259.0 | 2479.0 | 885.0 | 4277.0 |
| 06 | 1791.0 | 2114.0 | 1096.0 | 4899.0 |
| 07 | 2095.0 | 2593.0 | 1879.0 | 3333.0 |
| 08 | 3746.0 | 1367.0 | 2916.0 | 1871.0 |
| 09 | 6048.0 | 557.0 | 1600.0 | 1695.0 |
| 10 | 5554.0 | 160.0 | 1389.0 | 2797.0 |
| 11 | 19.0 | 9235.0 | 523.0 | 123.0 |
| 12 | 400.0 | 6632.0 | 181.0 | 2687.0 |
| 13 | 2762.0 | 149.0 | 6579.0 | 410.0 |
| 14 | 174.0 | 472.0 | 9242.0 | 12.0 |
| 15 | 2155.0 | 1734.0 | 140.0 | 5871.0 |
| 16 | 1348.0 | 1651.0 | 588.0 | 6313.0 |
| 17 | 1767.0 | 2677.0 | 1516.0 | 3940.0 |
| 18 | 4286.0 | 1112.0 | 2918.0 | 1584.0 |
| 19 | 6961.0 | 278.0 | 1242.0 | 1419.0 |
| 20 | 6513.0 | 16.0 | 705.0 | 2666.0 |
| 21 | 0.0 | 9749.0 | 142.0 | 9.0 |
| 22 | 77.0 | 7591.0 | 18.0 | 2214.0 |
| 23 | 2277.0 | 13.0 | 7542.0 | 68.0 |
| 24 | 11.0 | 139.0 | 9750.0 | 0.0 |
| 25 | 2707.0 | 857.0 | 78.0 | 6258.0 |
| 26 | 2048.5 | 1467.5 | 670.5 | 5713.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.07 | 0.657 | 0.144 | 0.129 |
| 02 | 0.111 | 0.507 | 0.095 | 0.288 |
| 03 | 0.306 | 0.103 | 0.474 | 0.117 |
| 04 | 0.09 | 0.109 | 0.738 | 0.063 |
| 05 | 0.228 | 0.25 | 0.089 | 0.432 |
| 06 | 0.181 | 0.214 | 0.111 | 0.495 |
| 07 | 0.212 | 0.262 | 0.19 | 0.337 |
| 08 | 0.378 | 0.138 | 0.295 | 0.189 |
| 09 | 0.611 | 0.056 | 0.162 | 0.171 |
| 10 | 0.561 | 0.016 | 0.14 | 0.283 |
| 11 | 0.002 | 0.933 | 0.053 | 0.012 |
| 12 | 0.04 | 0.67 | 0.018 | 0.271 |
| 13 | 0.279 | 0.015 | 0.665 | 0.041 |
| 14 | 0.018 | 0.048 | 0.934 | 0.001 |
| 15 | 0.218 | 0.175 | 0.014 | 0.593 |
| 16 | 0.136 | 0.167 | 0.059 | 0.638 |
| 17 | 0.178 | 0.27 | 0.153 | 0.398 |
| 18 | 0.433 | 0.112 | 0.295 | 0.16 |
| 19 | 0.703 | 0.028 | 0.125 | 0.143 |
| 20 | 0.658 | 0.002 | 0.071 | 0.269 |
| 21 | 0.0 | 0.985 | 0.014 | 0.001 |
| 22 | 0.008 | 0.767 | 0.002 | 0.224 |
| 23 | 0.23 | 0.001 | 0.762 | 0.007 |
| 24 | 0.001 | 0.014 | 0.985 | 0.0 |
| 25 | 0.273 | 0.087 | 0.008 | 0.632 |
| 26 | 0.207 | 0.148 | 0.068 | 0.577 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.277 | 0.966 | -0.548 | -0.663 |
| 02 | -0.811 | 0.706 | -0.968 | 0.14 |
| 03 | 0.201 | -0.884 | 0.639 | -0.755 |
| 04 | -1.016 | -0.827 | 1.081 | -1.378 |
| 05 | -0.091 | 0.002 | -1.027 | 0.547 |
| 06 | -0.323 | -0.157 | -0.813 | 0.682 |
| 07 | -0.167 | 0.047 | -0.275 | 0.297 |
| 08 | 0.414 | -0.593 | 0.164 | -0.279 |
| 09 | 0.893 | -1.488 | -0.436 | -0.378 |
| 10 | 0.808 | -2.725 | -0.577 | 0.122 |
| 11 | -4.756 | 1.316 | -1.551 | -2.984 |
| 12 | -1.818 | 0.985 | -2.604 | 0.082 |
| 13 | 0.11 | -2.796 | 0.977 | -1.793 |
| 14 | -2.643 | -1.653 | 1.317 | -5.155 |
| 15 | -0.138 | -0.355 | -2.857 | 0.863 |
| 16 | -0.607 | -0.404 | -1.434 | 0.936 |
| 17 | -0.337 | 0.078 | -0.49 | 0.465 |
| 18 | 0.549 | -0.799 | 0.165 | -0.446 |
| 19 | 1.033 | -2.179 | -0.689 | -0.556 |
| 20 | 0.967 | -4.908 | -1.253 | 0.074 |
| 21 | -6.982 | 1.37 | -2.843 | -5.39 |
| 22 | -3.442 | 1.12 | -4.804 | -0.111 |
| 23 | -0.083 | -5.087 | 1.114 | -3.562 |
| 24 | -5.227 | -2.864 | 1.37 | -6.982 |
| 25 | 0.09 | -1.059 | -3.429 | 0.927 |
| 26 | -0.189 | -0.522 | -1.303 | 0.836 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.19601 |
| 0.0005 | 2.59931 |
| 0.0001 | 5.50206 |