MotifTF65.H12INVITRO.0.P.D
Gene (human)RELA
(GeneCards)
Gene synonyms (human)NFKB3
Gene (mouse)Rela
Gene synonyms (mouse)Nfkb3
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnKGGRvTTYCCMn
GC content55.35%
Information content (bits; total / per base)13.042 / 1.003
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 65 (404) 0.895 0.967 0.847 0.945 0.864 0.95 3.662 4.899 247.77 577.222
Mouse 77 (478) 0.855 0.923 0.782 0.896 0.781 0.884 2.753 4.035 154.396 511.319

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.169 6.473 0.187 0.117
TF superclassImmunoglobulin fold {6} (TFClass)
TF classRel homology region (RHR) factors {6.1} (TFClass)
TF familyNFkappaB-related {6.1.1} (TFClass)
TF subfamilyNFkappaB p65-like {6.1.1.2} (TFClass)
TFClass IDTFClass: 6.1.1.2.1
HGNCHGNC:9955
MGIMGI:103290
EntrezGene (human)GeneID:5970
(SSTAR profile)
EntrezGene (mouse)GeneID:19697
(SSTAR profile)
UniProt ID (human)TF65_HUMAN
UniProt ID (mouse)TF65_MOUSE
UniProt AC (human)Q04206
(TFClass)
UniProt AC (mouse)Q04207
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 65 human, 77 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01174.0360.0169.0296.0
0279.083.0558.0279.0
0316.04.0971.08.0
0420.04.0908.067.0
05661.019.0287.032.0
06476.0222.0160.0141.0
070.037.00.0962.0
084.043.037.0915.0
099.0272.014.0704.0
106.0973.04.016.0
117.0969.05.018.0
12256.0566.069.0108.0
13362.0169.0285.0183.0
PFM
ACGT
010.1740.360.1690.296
020.0790.0830.5590.279
030.0160.0040.9720.008
040.020.0040.9090.067
050.6620.0190.2870.032
060.4760.2220.160.141
070.00.0370.00.963
080.0040.0430.0370.916
090.0090.2720.0140.705
100.0060.9740.0040.016
110.0070.970.0050.018
120.2560.5670.0690.108
130.3620.1690.2850.183
PWM
ACGT
01-0.3580.364-0.3870.169
02-1.136-1.0880.80.11
03-2.652-3.7821.353-3.252
04-2.449-3.7821.286-1.297
050.969-2.4960.138-2.009
060.642-0.117-0.441-0.566
07-4.981-1.871-4.9811.343
08-3.782-1.727-1.8711.293
09-3.1550.085-2.7721.032
10-3.4831.355-3.782-2.652
11-3.3611.351-3.621-2.545
120.0250.814-1.269-0.829
130.369-0.3870.131-0.308
Standard thresholds
P-value Threshold
0.001 3.64191
0.0005 4.77251
0.0001 7.02937