TF2LY.H12INVIVO.1.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TF2LY.H12INVIVO.1.SM.D
Gene (human)	TGIF2LY (GeneCards)
Gene synonyms (human)	TGIFLY
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	14
Consensus	nnTGACAGSTKWYd
GC content	51.22%
Information content (bits; total / per base)	16.391 / 1.171
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	1378

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.988	0.984	0.972	0.96	0.907	0.894
Overall, 2 experiments	best	0.989	0.985	0.974	0.963	0.922	0.907
Methyl HT-SELEX, 1 experiments	median	0.989	0.985	0.974	0.963	0.922	0.907
Methyl HT-SELEX, 1 experiments	best	0.989	0.985	0.974	0.963	0.922	0.907
Non-Methyl HT-SELEX, 1 experiments	median	0.988	0.982	0.97	0.958	0.892	0.882
Non-Methyl HT-SELEX, 1 experiments	best	0.988	0.982	0.97	0.958	0.892	0.882

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	TALE-type HD {3.1.4} (TFClass)
TF subfamily	PKNOX {3.1.4.5} (TFClass)
TFClass ID	TFClass: 3.1.4.5.4
HGNC	HGNC:18569
MGI
EntrezGene (human)	GeneID:90655 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	TF2LY_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IUE0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	TF2LY.H12INVIVO.1.SM.D.pcm
PWM	TF2LY.H12INVIVO.1.SM.D.pwm
PFM	TF2LY.H12INVIVO.1.SM.D.pfm
Alignment	TF2LY.H12INVIVO.1.SM.D.words.tsv
Threshold to P-value map	TF2LY.H12INVIVO.1.SM.D.thr
Motif in other formats
JASPAR format	TF2LY.H12INVIVO.1.SM.D_jaspar_format.txt
MEME format	TF2LY.H12INVIVO.1.SM.D_meme_format.meme
Transfac format	TF2LY.H12INVIVO.1.SM.D_transfac_format.txt
Homer format	TF2LY.H12INVIVO.1.SM.D_homer_format_0.001.txt TF2LY.H12INVIVO.1.SM.D_homer_format_0.0005.txt TF2LY.H12INVIVO.1.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	467.25	275.25	341.25	294.25
02	406.25	227.25	306.25	438.25
03	4.0	71.0	0.0	1303.0
04	0.0	0.0	1378.0	0.0
05	1378.0	0.0	0.0	0.0
06	0.0	1378.0	0.0	0.0
07	1378.0	0.0	0.0	0.0
08	0.0	0.0	1375.0	3.0
09	39.0	996.0	331.0	12.0
10	3.0	83.0	61.0	1231.0
11	109.0	60.0	1096.0	113.0
12	207.0	113.0	148.0	910.0
13	120.25	951.25	124.25	182.25
14	607.0	180.0	385.0	206.0

PFM

	A	C	G	T
01	0.339	0.2	0.248	0.214
02	0.295	0.165	0.222	0.318
03	0.003	0.052	0.0	0.946
04	0.0	0.0	1.0	0.0
05	1.0	0.0	0.0	0.0
06	0.0	1.0	0.0	0.0
07	1.0	0.0	0.0	0.0
08	0.0	0.0	0.998	0.002
09	0.028	0.723	0.24	0.009
10	0.002	0.06	0.044	0.893
11	0.079	0.044	0.795	0.082
12	0.15	0.082	0.107	0.66
13	0.087	0.69	0.09	0.132
14	0.44	0.131	0.279	0.149

PWM

	A	C	G	T
01	0.303	-0.223	-0.009	-0.157
02	0.164	-0.413	-0.117	0.24
03	-4.088	-1.56	-5.256	1.326
04	-5.256	-5.256	1.382	-5.256
05	1.382	-5.256	-5.256	-5.256
06	-5.256	1.382	-5.256	-5.256
07	1.382	-5.256	-5.256	-5.256
08	-5.256	-5.256	1.38	-4.277
09	-2.138	1.058	-0.04	-3.222
10	-4.277	-1.407	-1.707	1.27
11	-1.14	-1.723	1.154	-1.104
12	-0.506	-1.104	-0.838	0.968
13	-1.043	1.012	-1.011	-0.632
14	0.564	-0.644	0.111	-0.511

Standard thresholds

P-value	Threshold
0.001	0.90161
0.0005	2.46401
0.0001	5.752865