MotifTF2LY.H12INVIVO.1.SM.D
Gene (human)TGIF2LY
(GeneCards)
Gene synonyms (human)TGIFLY
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length14
ConsensusnnTGACAGSTKWYd
GC content51.22%
Information content (bits; total / per base)16.391 / 1.171
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words1378

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.988 0.984 0.972 0.96 0.907 0.894
best 0.989 0.985 0.974 0.963 0.922 0.907
Methyl HT-SELEX, 1 experiments median 0.989 0.985 0.974 0.963 0.922 0.907
best 0.989 0.985 0.974 0.963 0.922 0.907
Non-Methyl HT-SELEX, 1 experiments median 0.988 0.982 0.97 0.958 0.892 0.882
best 0.988 0.982 0.97 0.958 0.892 0.882
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPKNOX {3.1.4.5} (TFClass)
TFClass IDTFClass: 3.1.4.5.4
HGNCHGNC:18569
MGI
EntrezGene (human)GeneID:90655
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)TF2LY_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8IUE0
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01467.25275.25341.25294.25
02406.25227.25306.25438.25
034.071.00.01303.0
040.00.01378.00.0
051378.00.00.00.0
060.01378.00.00.0
071378.00.00.00.0
080.00.01375.03.0
0939.0996.0331.012.0
103.083.061.01231.0
11109.060.01096.0113.0
12207.0113.0148.0910.0
13120.25951.25124.25182.25
14607.0180.0385.0206.0
PFM
ACGT
010.3390.20.2480.214
020.2950.1650.2220.318
030.0030.0520.00.946
040.00.01.00.0
051.00.00.00.0
060.01.00.00.0
071.00.00.00.0
080.00.00.9980.002
090.0280.7230.240.009
100.0020.060.0440.893
110.0790.0440.7950.082
120.150.0820.1070.66
130.0870.690.090.132
140.440.1310.2790.149
PWM
ACGT
010.303-0.223-0.009-0.157
020.164-0.413-0.1170.24
03-4.088-1.56-5.2561.326
04-5.256-5.2561.382-5.256
051.382-5.256-5.256-5.256
06-5.2561.382-5.256-5.256
071.382-5.256-5.256-5.256
08-5.256-5.2561.38-4.277
09-2.1381.058-0.04-3.222
10-4.277-1.407-1.7071.27
11-1.14-1.7231.154-1.104
12-0.506-1.104-0.8380.968
13-1.0431.012-1.011-0.632
140.564-0.6440.111-0.511
Standard thresholds
P-value Threshold
0.001 0.90161
0.0005 2.46401
0.0001 5.752865