TF2LY.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TF2LY.H12INVIVO.0.SM.D
Gene (human)	TGIF2LY (GeneCards)
Gene synonyms (human)	TGIFLY
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	nnTGACAGSYddhn
GC content	50.72%
Information content (bits; total / per base)	13.0 / 0.929
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9969

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.989	0.983	0.976	0.965	0.931	0.916
Overall, 2 experiments	best	0.989	0.984	0.976	0.965	0.941	0.924
Methyl HT-SELEX, 1 experiments	median	0.989	0.984	0.976	0.965	0.941	0.924
Methyl HT-SELEX, 1 experiments	best	0.989	0.984	0.976	0.965	0.941	0.924
Non-Methyl HT-SELEX, 1 experiments	median	0.989	0.983	0.976	0.965	0.921	0.909
Non-Methyl HT-SELEX, 1 experiments	best	0.989	0.983	0.976	0.965	0.921	0.909

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	TALE-type HD {3.1.4} (TFClass)
TF subfamily	PKNOX {3.1.4.5} (TFClass)
TFClass ID	TFClass: 3.1.4.5.4
HGNC	HGNC:18569
MGI
EntrezGene (human)	GeneID:90655 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	TF2LY_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IUE0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	TF2LY.H12INVIVO.0.SM.D.pcm
PWM	TF2LY.H12INVIVO.0.SM.D.pwm
PFM	TF2LY.H12INVIVO.0.SM.D.pfm
Alignment	TF2LY.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	TF2LY.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	TF2LY.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	TF2LY.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	TF2LY.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	TF2LY.H12INVIVO.0.SM.D_homer_format_0.001.txt TF2LY.H12INVIVO.0.SM.D_homer_format_0.0005.txt TF2LY.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2959.5	2071.5	2477.5	2460.5
02	2544.75	1739.75	2193.75	3490.75
03	65.0	46.0	9.0	9849.0
04	0.0	0.0	9969.0	0.0
05	9912.0	0.0	0.0	57.0
06	0.0	9969.0	0.0	0.0
07	9931.0	0.0	38.0	0.0
08	95.0	99.0	9442.0	333.0
09	664.0	6165.0	2669.0	471.0
10	598.0	2042.0	1354.0	5975.0
11	1764.0	1371.0	4813.0	2021.0
12	2121.0	1647.0	2178.0	4023.0
13	1881.5	4478.5	1678.5	1930.5
14	3584.5	2044.5	2286.5	2053.5

PFM

	A	C	G	T
01	0.297	0.208	0.249	0.247
02	0.255	0.175	0.22	0.35
03	0.007	0.005	0.001	0.988
04	0.0	0.0	1.0	0.0
05	0.994	0.0	0.0	0.006
06	0.0	1.0	0.0	0.0
07	0.996	0.0	0.004	0.0
08	0.01	0.01	0.947	0.033
09	0.067	0.618	0.268	0.047
10	0.06	0.205	0.136	0.599
11	0.177	0.138	0.483	0.203
12	0.213	0.165	0.218	0.404
13	0.189	0.449	0.168	0.194
14	0.36	0.205	0.229	0.206

PWM

	A	C	G	T
01	0.172	-0.185	-0.006	-0.013
02	0.021	-0.359	-0.127	0.337
03	-3.613	-3.944	-5.397	1.373
04	-6.988	-6.988	1.386	-6.988
05	1.38	-6.988	-6.988	-3.739
06	-6.988	1.386	-6.988	-6.988
07	1.382	-6.988	-4.125	-6.988
08	-3.244	-3.204	1.331	-2.007
09	-1.32	0.905	0.068	-1.662
10	-1.424	-0.199	-0.609	0.874
11	-0.345	-0.597	0.658	-0.209
12	-0.161	-0.414	-0.135	0.478
13	-0.281	0.586	-0.395	-0.255
14	0.363	-0.198	-0.086	-0.193

Standard thresholds

P-value	Threshold
0.001	2.59711
0.0005	4.07851
0.0001	7.436865