MotifTF2LY.H12INVITRO.0.SM.B
Gene (human)TGIF2LY
(GeneCards)
Gene synonyms (human)TGIFLY
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length14
ConsensusnnTGACAGSYddhn
GC content50.72%
Information content (bits; total / per base)13.0 / 0.929
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9969

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.989 0.983 0.976 0.965 0.931 0.916
best 0.989 0.984 0.976 0.965 0.941 0.924
Methyl HT-SELEX, 1 experiments median 0.989 0.984 0.976 0.965 0.941 0.924
best 0.989 0.984 0.976 0.965 0.941 0.924
Non-Methyl HT-SELEX, 1 experiments median 0.989 0.983 0.976 0.965 0.921 0.909
best 0.989 0.983 0.976 0.965 0.921 0.909
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPKNOX {3.1.4.5} (TFClass)
TFClass IDTFClass: 3.1.4.5.4
HGNCHGNC:18569
MGI
EntrezGene (human)GeneID:90655
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)TF2LY_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8IUE0
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012959.52071.52477.52460.5
022544.751739.752193.753490.75
0365.046.09.09849.0
040.00.09969.00.0
059912.00.00.057.0
060.09969.00.00.0
079931.00.038.00.0
0895.099.09442.0333.0
09664.06165.02669.0471.0
10598.02042.01354.05975.0
111764.01371.04813.02021.0
122121.01647.02178.04023.0
131881.54478.51678.51930.5
143584.52044.52286.52053.5
PFM
ACGT
010.2970.2080.2490.247
020.2550.1750.220.35
030.0070.0050.0010.988
040.00.01.00.0
050.9940.00.00.006
060.01.00.00.0
070.9960.00.0040.0
080.010.010.9470.033
090.0670.6180.2680.047
100.060.2050.1360.599
110.1770.1380.4830.203
120.2130.1650.2180.404
130.1890.4490.1680.194
140.360.2050.2290.206
PWM
ACGT
010.172-0.185-0.006-0.013
020.021-0.359-0.1270.337
03-3.613-3.944-5.3971.373
04-6.988-6.9881.386-6.988
051.38-6.988-6.988-3.739
06-6.9881.386-6.988-6.988
071.382-6.988-4.125-6.988
08-3.244-3.2041.331-2.007
09-1.320.9050.068-1.662
10-1.424-0.199-0.6090.874
11-0.345-0.5970.658-0.209
12-0.161-0.414-0.1350.478
13-0.2810.586-0.395-0.255
140.363-0.198-0.086-0.193
Standard thresholds
P-value Threshold
0.001 2.59711
0.0005 4.07851
0.0001 7.436865