Motif | TF2LY.H12CORE.1.SM.B |
Gene (human) | TGIF2LY (GeneCards) |
Gene synonyms (human) | TGIFLY |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | TF2LY.H12CORE.1.SM.B |
Gene (human) | TGIF2LY (GeneCards) |
Gene synonyms (human) | TGIFLY |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 14 |
Consensus | nnTGACAGSTKWYd |
GC content | 51.22% |
Information content (bits; total / per base) | 16.391 / 1.171 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 1378 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.988 | 0.984 | 0.972 | 0.96 | 0.907 | 0.894 |
best | 0.989 | 0.985 | 0.974 | 0.963 | 0.922 | 0.907 | |
Methyl HT-SELEX, 1 experiments | median | 0.989 | 0.985 | 0.974 | 0.963 | 0.922 | 0.907 |
best | 0.989 | 0.985 | 0.974 | 0.963 | 0.922 | 0.907 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.988 | 0.982 | 0.97 | 0.958 | 0.892 | 0.882 |
best | 0.988 | 0.982 | 0.97 | 0.958 | 0.892 | 0.882 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | TALE-type HD {3.1.4} (TFClass) |
TF subfamily | PKNOX {3.1.4.5} (TFClass) |
TFClass ID | TFClass: 3.1.4.5.4 |
HGNC | HGNC:18569 |
MGI | |
EntrezGene (human) | GeneID:90655 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | TF2LY_HUMAN |
UniProt ID (mouse) | |
UniProt AC (human) | Q8IUE0 (TFClass) |
UniProt AC (mouse) | |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | TF2LY.H12CORE.1.SM.B.pcm |
PWM | TF2LY.H12CORE.1.SM.B.pwm |
PFM | TF2LY.H12CORE.1.SM.B.pfm |
Alignment | TF2LY.H12CORE.1.SM.B.words.tsv |
Threshold to P-value map | TF2LY.H12CORE.1.SM.B.thr |
Motif in other formats | |
JASPAR format | TF2LY.H12CORE.1.SM.B_jaspar_format.txt |
MEME format | TF2LY.H12CORE.1.SM.B_meme_format.meme |
Transfac format | TF2LY.H12CORE.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 467.25 | 275.25 | 341.25 | 294.25 |
02 | 406.25 | 227.25 | 306.25 | 438.25 |
03 | 4.0 | 71.0 | 0.0 | 1303.0 |
04 | 0.0 | 0.0 | 1378.0 | 0.0 |
05 | 1378.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 1378.0 | 0.0 | 0.0 |
07 | 1378.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 1375.0 | 3.0 |
09 | 39.0 | 996.0 | 331.0 | 12.0 |
10 | 3.0 | 83.0 | 61.0 | 1231.0 |
11 | 109.0 | 60.0 | 1096.0 | 113.0 |
12 | 207.0 | 113.0 | 148.0 | 910.0 |
13 | 120.25 | 951.25 | 124.25 | 182.25 |
14 | 607.0 | 180.0 | 385.0 | 206.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.339 | 0.2 | 0.248 | 0.214 |
02 | 0.295 | 0.165 | 0.222 | 0.318 |
03 | 0.003 | 0.052 | 0.0 | 0.946 |
04 | 0.0 | 0.0 | 1.0 | 0.0 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 1.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.998 | 0.002 |
09 | 0.028 | 0.723 | 0.24 | 0.009 |
10 | 0.002 | 0.06 | 0.044 | 0.893 |
11 | 0.079 | 0.044 | 0.795 | 0.082 |
12 | 0.15 | 0.082 | 0.107 | 0.66 |
13 | 0.087 | 0.69 | 0.09 | 0.132 |
14 | 0.44 | 0.131 | 0.279 | 0.149 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.303 | -0.223 | -0.009 | -0.157 |
02 | 0.164 | -0.413 | -0.117 | 0.24 |
03 | -4.088 | -1.56 | -5.256 | 1.326 |
04 | -5.256 | -5.256 | 1.382 | -5.256 |
05 | 1.382 | -5.256 | -5.256 | -5.256 |
06 | -5.256 | 1.382 | -5.256 | -5.256 |
07 | 1.382 | -5.256 | -5.256 | -5.256 |
08 | -5.256 | -5.256 | 1.38 | -4.277 |
09 | -2.138 | 1.058 | -0.04 | -3.222 |
10 | -4.277 | -1.407 | -1.707 | 1.27 |
11 | -1.14 | -1.723 | 1.154 | -1.104 |
12 | -0.506 | -1.104 | -0.838 | 0.968 |
13 | -1.043 | 1.012 | -1.011 | -0.632 |
14 | 0.564 | -0.644 | 0.111 | -0.511 |
P-value | Threshold |
---|---|
0.001 | 0.90161 |
0.0005 | 2.46401 |
0.0001 | 5.752865 |