MotifTF2LX.H12INVIVO.0.SM.D
Gene (human)TGIF2LX
(GeneCards)
Gene synonyms (human)TGIFLX
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length8
ConsensusnTGACAbn
GC content46.47%
Information content (bits; total / per base)9.061 / 1.133
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words3685

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.988 0.984 0.936 0.923 0.825 0.82
best 1.0 0.999 0.998 0.997 0.978 0.974
Methyl HT-SELEX, 2 experiments median 0.99 0.988 0.959 0.951 0.885 0.883
best 1.0 0.999 0.998 0.997 0.978 0.974
Non-Methyl HT-SELEX, 4 experiments median 0.821 0.8 0.759 0.752 0.699 0.694
best 0.999 0.999 0.998 0.997 0.973 0.968
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPKNOX {3.1.4.5} (TFClass)
TFClass IDTFClass: 3.1.4.5.3
HGNCHGNC:18570
MGI
EntrezGene (human)GeneID:90316
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)TF2LX_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8IUE1
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
011152.75656.75818.751056.75
020.00.0204.03481.0
0314.00.03671.00.0
043685.00.00.00.0
0513.03625.047.00.0
063073.00.0612.00.0
07445.0617.01519.01104.0
08891.0980.0950.0864.0
PFM
ACGT
010.3130.1780.2220.287
020.00.00.0550.945
030.0040.00.9960.0
041.00.00.00.0
050.0040.9840.0130.0
060.8340.00.1660.0
070.1210.1670.4120.3
080.2420.2660.2580.234
PWM
ACGT
010.224-0.338-0.1180.137
02-6.109-6.109-1.51.328
03-4.052-6.1091.381-6.109
041.385-6.109-6.109-6.109
05-4.1161.368-2.935-6.109
061.203-6.109-0.408-6.109
07-0.725-0.40.4990.181
08-0.0330.0620.031-0.064
Standard thresholds
P-value Threshold
0.001 5.6913
0.0005 6.47209
0.0001 7.25689