MotifTF2LX.H12INVITRO.1.SM.B
Gene (human)TGIF2LX
(GeneCards)
Gene synonyms (human)TGIFLX
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length16
ConsensusnndTGACAGCTKdYdn
GC content49.42%
Information content (bits; total / per base)15.781 / 0.986
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2234

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.947 0.921 0.89 0.858 0.786 0.768
best 0.997 0.996 0.99 0.986 0.965 0.956
Methyl HT-SELEX, 2 experiments median 0.969 0.955 0.932 0.914 0.862 0.851
best 0.997 0.996 0.99 0.986 0.965 0.956
Non-Methyl HT-SELEX, 4 experiments median 0.758 0.74 0.72 0.702 0.666 0.655
best 0.994 0.992 0.986 0.98 0.948 0.938
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPKNOX {3.1.4.5} (TFClass)
TFClass IDTFClass: 3.1.4.5.3
HGNCHGNC:18570
MGI
EntrezGene (human)GeneID:90316
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)TF2LX_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8IUE1
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
01648.5574.5490.5520.5
02796.25363.25436.25638.25
03576.0298.0370.0990.0
044.071.00.02159.0
050.00.02234.00.0
062232.00.00.02.0
070.02234.00.00.0
082234.00.00.00.0
090.05.02218.011.0
1042.01840.0333.019.0
1140.0226.0183.01785.0
12269.0173.01484.0308.0
13407.0211.0295.01321.0
14234.01418.0245.0337.0
151064.5296.5520.5352.5
16446.25528.25616.25643.25
PFM
ACGT
010.290.2570.220.233
020.3560.1630.1950.286
030.2580.1330.1660.443
040.0020.0320.00.966
050.00.01.00.0
060.9990.00.00.001
070.01.00.00.0
081.00.00.00.0
090.00.0020.9930.005
100.0190.8240.1490.009
110.0180.1010.0820.799
120.120.0770.6640.138
130.1820.0940.1320.591
140.1050.6350.110.151
150.4760.1330.2330.158
160.20.2360.2760.288
PWM
ACGT
010.1490.028-0.129-0.07
020.354-0.428-0.2460.133
030.031-0.625-0.410.571
04-4.549-2.039-5.6721.35
05-5.672-5.6721.384-5.672
061.383-5.672-5.672-4.961
07-5.6721.384-5.672-5.672
081.384-5.672-5.672-5.672
09-5.672-4.3931.377-3.769
10-2.5461.19-0.515-3.288
11-2.593-0.9-1.1091.16
12-0.727-1.1640.975-0.592
13-0.315-0.968-0.6350.859
14-0.8650.93-0.82-0.503
150.643-0.63-0.07-0.458
16-0.224-0.0550.0980.141
Standard thresholds
P-value Threshold
0.001 1.10046
0.0005 2.63901
0.0001 6.01891