MotifTF2L1.H12INVITRO.1.P.B
Gene (human)TFCP2L1
(GeneCards)
Gene synonyms (human)CRTR1, LBP9
Gene (mouse)Tfcp2l1
Gene synonyms (mouse)Crtr1, Tcfcp2l1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length9
ConsensusvRWCCRGYY
GC content53.58%
Information content (bits; total / per base)8.848 / 0.983
Data sourcesChIP-Seq
Aligned words994

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (14) 0.818 0.869 0.674 0.742 0.748 0.792 1.988 2.241 103.812 360.155

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.951 0.921 0.928 0.891 0.882 0.846
best 0.957 0.931 0.934 0.901 0.902 0.86
Methyl HT-SELEX, 2 experiments median 0.954 0.926 0.932 0.897 0.896 0.857
best 0.957 0.931 0.934 0.901 0.902 0.86
Non-Methyl HT-SELEX, 2 experiments median 0.937 0.902 0.91 0.868 0.864 0.821
best 0.95 0.921 0.925 0.889 0.876 0.838
TF superclassImmunoglobulin fold {6} (TFClass)
TF classGrainyhead domain factors {6.7} (TFClass)
TF familyCP2-related {6.7.2} (TFClass)
TF subfamily {6.7.2.0} (TFClass)
TFClass IDTFClass: 6.7.2.0.2
HGNCHGNC:17925
MGIMGI:2444691
EntrezGene (human)GeneID:29842
(SSTAR profile)
EntrezGene (mouse)GeneID:81879
(SSTAR profile)
UniProt ID (human)TF2L1_HUMAN
UniProt ID (mouse)TF2L1_MOUSE
UniProt AC (human)Q9NZI6
(TFClass)
UniProt AC (mouse)Q3UNW5
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
01419.0109.0404.062.0
02751.029.0147.067.0
03526.011.0222.0235.0
041.0975.011.07.0
0520.0955.02.017.0
06685.02.0204.0103.0
072.010.0982.00.0
08137.0311.034.0512.0
0984.0340.045.0525.0
PFM
ACGT
010.4220.110.4060.062
020.7560.0290.1480.067
030.5290.0110.2230.236
040.0010.9810.0110.007
050.020.9610.0020.017
060.6890.0020.2050.104
070.0020.010.9880.0
080.1380.3130.0340.515
090.0850.3420.0450.528
PWM
ACGT
010.52-0.8150.483-1.368
021.101-2.097-0.52-1.292
030.746-2.979-0.112-0.055
04-4.521.362-2.979-3.356
05-2.4441.341-4.207-2.592
061.01-4.207-0.196-0.871
07-4.207-3.0611.369-4.977
08-0.590.223-1.9460.719
09-1.0710.312-1.6780.744
Standard thresholds
P-value Threshold
0.001 5.15061
0.0005 5.95192
0.0001 7.266715