| Motif | TF2L1.H12CORE.0.PSM.A |
| Gene (human) | TFCP2L1 (GeneCards) |
| Gene synonyms (human) | CRTR1, LBP9 |
| Gene (mouse) | Tfcp2l1 |
| Gene synonyms (mouse) | Crtr1, Tcfcp2l1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TF2L1.H12CORE.0.PSM.A |
| Gene (human) | TFCP2L1 (GeneCards) |
| Gene synonyms (human) | CRTR1, LBP9 |
| Gene (mouse) | Tfcp2l1 |
| Gene synonyms (mouse) | Crtr1, Tcfcp2l1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 20 |
| Consensus | nddCYRGhbndWACCGGWWn |
| GC content | 53.12% |
| Information content (bits; total / per base) | 15.494 / 0.775 |
| Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9063 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (14) | 0.933 | 0.975 | 0.878 | 0.938 | 0.908 | 0.957 | 4.513 | 4.919 | 292.31 | 784.252 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.997 | 0.996 | 0.993 | 0.99 | 0.974 | 0.967 |
| best | 0.998 | 0.997 | 0.996 | 0.994 | 0.989 | 0.985 | |
| Methyl HT-SELEX, 2 experiments | median | 0.998 | 0.997 | 0.995 | 0.993 | 0.983 | 0.978 |
| best | 0.998 | 0.997 | 0.996 | 0.994 | 0.989 | 0.985 | |
| Non-Methyl HT-SELEX, 2 experiments | median | 0.995 | 0.992 | 0.989 | 0.983 | 0.968 | 0.958 |
| best | 0.997 | 0.995 | 0.992 | 0.988 | 0.97 | 0.962 | |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Grainyhead domain factors {6.7} (TFClass) |
| TF family | CP2-related {6.7.2} (TFClass) |
| TF subfamily | {6.7.2.0} (TFClass) |
| TFClass ID | TFClass: 6.7.2.0.2 |
| HGNC | HGNC:17925 |
| MGI | MGI:2444691 |
| EntrezGene (human) | GeneID:29842 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:81879 (SSTAR profile) |
| UniProt ID (human) | TF2L1_HUMAN |
| UniProt ID (mouse) | TF2L1_MOUSE |
| UniProt AC (human) | Q9NZI6 (TFClass) |
| UniProt AC (mouse) | Q3UNW5 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 2 |
| PCM | TF2L1.H12CORE.0.PSM.A.pcm |
| PWM | TF2L1.H12CORE.0.PSM.A.pwm |
| PFM | TF2L1.H12CORE.0.PSM.A.pfm |
| Alignment | TF2L1.H12CORE.0.PSM.A.words.tsv |
| Threshold to P-value map | TF2L1.H12CORE.0.PSM.A.thr |
| Motif in other formats | |
| JASPAR format | TF2L1.H12CORE.0.PSM.A_jaspar_format.txt |
| MEME format | TF2L1.H12CORE.0.PSM.A_meme_format.meme |
| Transfac format | TF2L1.H12CORE.0.PSM.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2671.5 | 1896.5 | 2588.5 | 1906.5 |
| 02 | 4413.5 | 947.5 | 1923.5 | 1778.5 |
| 03 | 4363.0 | 353.0 | 1992.0 | 2355.0 |
| 04 | 65.0 | 8034.0 | 705.0 | 259.0 |
| 05 | 441.0 | 5813.0 | 259.0 | 2550.0 |
| 06 | 2732.0 | 229.0 | 5661.0 | 441.0 |
| 07 | 186.0 | 644.0 | 8183.0 | 50.0 |
| 08 | 1759.0 | 2750.0 | 263.0 | 4291.0 |
| 09 | 875.0 | 2425.0 | 943.0 | 4820.0 |
| 10 | 1652.0 | 2320.0 | 2281.0 | 2810.0 |
| 11 | 3463.0 | 846.0 | 3516.0 | 1238.0 |
| 12 | 6647.0 | 221.0 | 860.0 | 1335.0 |
| 13 | 6967.0 | 12.0 | 91.0 | 1993.0 |
| 14 | 0.0 | 9039.0 | 22.0 | 2.0 |
| 15 | 21.0 | 7713.0 | 0.0 | 1329.0 |
| 16 | 1526.0 | 8.0 | 7487.0 | 42.0 |
| 17 | 5.0 | 123.0 | 8933.0 | 2.0 |
| 18 | 2087.0 | 778.0 | 36.0 | 6162.0 |
| 19 | 1519.75 | 1430.75 | 632.75 | 5479.75 |
| 20 | 1944.0 | 2572.0 | 1749.0 | 2798.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.295 | 0.209 | 0.286 | 0.21 |
| 02 | 0.487 | 0.105 | 0.212 | 0.196 |
| 03 | 0.481 | 0.039 | 0.22 | 0.26 |
| 04 | 0.007 | 0.886 | 0.078 | 0.029 |
| 05 | 0.049 | 0.641 | 0.029 | 0.281 |
| 06 | 0.301 | 0.025 | 0.625 | 0.049 |
| 07 | 0.021 | 0.071 | 0.903 | 0.006 |
| 08 | 0.194 | 0.303 | 0.029 | 0.473 |
| 09 | 0.097 | 0.268 | 0.104 | 0.532 |
| 10 | 0.182 | 0.256 | 0.252 | 0.31 |
| 11 | 0.382 | 0.093 | 0.388 | 0.137 |
| 12 | 0.733 | 0.024 | 0.095 | 0.147 |
| 13 | 0.769 | 0.001 | 0.01 | 0.22 |
| 14 | 0.0 | 0.997 | 0.002 | 0.0 |
| 15 | 0.002 | 0.851 | 0.0 | 0.147 |
| 16 | 0.168 | 0.001 | 0.826 | 0.005 |
| 17 | 0.001 | 0.014 | 0.986 | 0.0 |
| 18 | 0.23 | 0.086 | 0.004 | 0.68 |
| 19 | 0.168 | 0.158 | 0.07 | 0.605 |
| 20 | 0.214 | 0.284 | 0.193 | 0.309 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.165 | -0.178 | 0.133 | -0.172 |
| 02 | 0.666 | -0.87 | -0.164 | -0.242 |
| 03 | 0.655 | -1.854 | -0.129 | 0.039 |
| 04 | -3.518 | 1.265 | -1.165 | -2.161 |
| 05 | -1.632 | 0.942 | -2.161 | 0.118 |
| 06 | 0.187 | -2.283 | 0.915 | -1.632 |
| 07 | -2.489 | -1.255 | 1.283 | -3.77 |
| 08 | -0.253 | 0.194 | -2.146 | 0.638 |
| 09 | -0.95 | 0.068 | -0.875 | 0.754 |
| 10 | -0.316 | 0.024 | 0.007 | 0.215 |
| 11 | 0.424 | -0.983 | 0.439 | -0.604 |
| 12 | 1.076 | -2.318 | -0.967 | -0.528 |
| 13 | 1.123 | -5.068 | -3.191 | -0.128 |
| 14 | -6.903 | 1.383 | -4.537 | -6.273 |
| 15 | -4.579 | 1.224 | -6.903 | -0.533 |
| 16 | -0.395 | -5.397 | 1.195 | -3.936 |
| 17 | -5.742 | -2.896 | 1.371 | -6.273 |
| 18 | -0.082 | -1.067 | -4.082 | 1.0 |
| 19 | -0.399 | -0.459 | -1.273 | 0.883 |
| 20 | -0.153 | 0.127 | -0.259 | 0.211 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.32946 |
| 0.0005 | 3.67726 |
| 0.0001 | 6.39946 |