MotifTEF.H12INVIVO.0.SM.D
Gene (human)TEF
(GeneCards)
Gene synonyms (human)KIAA1655
Gene (mouse)Tef
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnRTTAYGTAAbvn
GC content36.56%
Information content (bits; total / per base)14.711 / 1.132
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9950

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.994 0.989 0.973 0.965 0.829 0.846
best 0.999 0.999 0.999 0.998 0.998 0.997
Methyl HT-SELEX, 1 experiments median 0.999 0.998 0.998 0.997 0.997 0.996
best 0.999 0.998 0.998 0.997 0.997 0.996
Non-Methyl HT-SELEX, 5 experiments median 0.992 0.985 0.965 0.96 0.782 0.811
best 0.999 0.999 0.999 0.998 0.998 0.997
TF superclassBasic domains {1} (TFClass)
TF classBasic leucine zipper factors (bZIP) {1.1} (TFClass)
TF familyC/EBP-related {1.1.8} (TFClass)
TF subfamilyPAR {1.1.8.2} (TFClass)
TFClass IDTFClass: 1.1.8.2.4
HGNCHGNC:11722
MGIMGI:98663
EntrezGene (human)GeneID:7008
(SSTAR profile)
EntrezGene (mouse)GeneID:21685
(SSTAR profile)
UniProt ID (human)TEF_HUMAN
UniProt ID (mouse)TEF_MOUSE
UniProt AC (human)Q10587
(TFClass)
UniProt AC (mouse)Q9JLC6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
011942.752590.752443.752972.75
022251.751326.756234.75136.75
0312.049.05.09884.0
0423.012.0436.09479.0
059924.00.026.00.0
060.05207.04.04739.0
0741.09.09899.01.0
0820.01379.01.08550.0
099725.0119.065.041.0
109835.034.028.053.0
11317.03887.01889.03857.0
122133.53634.52820.51361.5
132579.752484.752701.752183.75
PFM
ACGT
010.1950.260.2460.299
020.2260.1330.6270.014
030.0010.0050.0010.993
040.0020.0010.0440.953
050.9970.00.0030.0
060.00.5230.00.476
070.0040.0010.9950.0
080.0020.1390.00.859
090.9770.0120.0070.004
100.9880.0030.0030.005
110.0320.3910.190.388
120.2140.3650.2830.137
130.2590.250.2720.219
PWM
ACGT
01-0.2470.041-0.0180.178
02-0.099-0.6280.918-2.885
03-5.16-3.882-5.8321.379
04-4.589-5.16-1.7371.337
051.383-6.986-4.477-6.986
06-6.9860.738-5.9790.644
07-4.052-5.3951.38-6.626
08-4.715-0.589-6.6261.234
091.363-3.022-3.611-4.052
101.374-4.228-4.409-3.807
11-2.0540.446-0.2750.438
12-0.1530.3790.126-0.602
130.036-0.0010.083-0.13
Standard thresholds
P-value Threshold
0.001 1.352015
0.0005 3.071665
0.0001 5.95647