TEF.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TEF.H12INVIVO.0.SM.D
Gene (human)	TEF (GeneCards)
Gene synonyms (human)	KIAA1655
Gene (mouse)	Tef
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	13
Consensus	nRTTAYGTAAbvn
GC content	36.56%
Information content (bits; total / per base)	14.711 / 1.132
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9950

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 6 experiments	median	0.994	0.989	0.973	0.965	0.829	0.846
Overall, 6 experiments	best	0.999	0.999	0.999	0.998	0.998	0.997
Methyl HT-SELEX, 1 experiments	median	0.999	0.998	0.998	0.997	0.997	0.996
Methyl HT-SELEX, 1 experiments	best	0.999	0.998	0.998	0.997	0.997	0.996
Non-Methyl HT-SELEX, 5 experiments	median	0.992	0.985	0.965	0.96	0.782	0.811
Non-Methyl HT-SELEX, 5 experiments	best	0.999	0.999	0.999	0.998	0.998	0.997

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	PAR {1.1.8.2} (TFClass)
TFClass ID	TFClass: 1.1.8.2.4
HGNC	HGNC:11722
MGI	MGI:98663
EntrezGene (human)	GeneID:7008 (SSTAR profile)
EntrezGene (mouse)	GeneID:21685 (SSTAR profile)
UniProt ID (human)	TEF_HUMAN
UniProt ID (mouse)	TEF_MOUSE
UniProt AC (human)	Q10587 (TFClass)
UniProt AC (mouse)	Q9JLC6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	5
Methyl-HT-SELEX	1

PCM	TEF.H12INVIVO.0.SM.D.pcm
PWM	TEF.H12INVIVO.0.SM.D.pwm
PFM	TEF.H12INVIVO.0.SM.D.pfm
Alignment	TEF.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	TEF.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	TEF.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	TEF.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	TEF.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	TEF.H12INVIVO.0.SM.D_homer_format_0.001.txt TEF.H12INVIVO.0.SM.D_homer_format_0.0005.txt TEF.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1942.75	2590.75	2443.75	2972.75
02	2251.75	1326.75	6234.75	136.75
03	12.0	49.0	5.0	9884.0
04	23.0	12.0	436.0	9479.0
05	9924.0	0.0	26.0	0.0
06	0.0	5207.0	4.0	4739.0
07	41.0	9.0	9899.0	1.0
08	20.0	1379.0	1.0	8550.0
09	9725.0	119.0	65.0	41.0
10	9835.0	34.0	28.0	53.0
11	317.0	3887.0	1889.0	3857.0
12	2133.5	3634.5	2820.5	1361.5
13	2579.75	2484.75	2701.75	2183.75

PFM

	A	C	G	T
01	0.195	0.26	0.246	0.299
02	0.226	0.133	0.627	0.014
03	0.001	0.005	0.001	0.993
04	0.002	0.001	0.044	0.953
05	0.997	0.0	0.003	0.0
06	0.0	0.523	0.0	0.476
07	0.004	0.001	0.995	0.0
08	0.002	0.139	0.0	0.859
09	0.977	0.012	0.007	0.004
10	0.988	0.003	0.003	0.005
11	0.032	0.391	0.19	0.388
12	0.214	0.365	0.283	0.137
13	0.259	0.25	0.272	0.219

PWM

	A	C	G	T
01	-0.247	0.041	-0.018	0.178
02	-0.099	-0.628	0.918	-2.885
03	-5.16	-3.882	-5.832	1.379
04	-4.589	-5.16	-1.737	1.337
05	1.383	-6.986	-4.477	-6.986
06	-6.986	0.738	-5.979	0.644
07	-4.052	-5.395	1.38	-6.626
08	-4.715	-0.589	-6.626	1.234
09	1.363	-3.022	-3.611	-4.052
10	1.374	-4.228	-4.409	-3.807
11	-2.054	0.446	-0.275	0.438
12	-0.153	0.379	0.126	-0.602
13	0.036	-0.001	0.083	-0.13

Standard thresholds

P-value	Threshold
0.001	1.352015
0.0005	3.071665
0.0001	5.95647