| Motif | TBX4.H12INVIVO.0.PS.A |
| Gene (human) | TBX4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tbx4 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | TBX4.H12INVIVO.0.PS.A |
| Gene (human) | TBX4 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tbx4 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 9 |
| Consensus | vAGSTGhbd |
| GC content | 55.86% |
| Information content (bits; total / per base) | 8.815 / 0.979 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 1007 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (5) | 0.698 | 0.71 | 0.544 | 0.555 | 0.672 | 0.678 | 1.729 | 1.755 | 32.0 | 39.155 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.916 | 0.895 | 0.815 | 0.798 | 0.697 | 0.701 |
| best | 0.975 | 0.963 | 0.897 | 0.882 | 0.758 | 0.763 | |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | T-Box factors {6.5} (TFClass) |
| TF family | TBX2-related {6.5.4} (TFClass) |
| TF subfamily | {6.5.4.0} (TFClass) |
| TFClass ID | TFClass: 6.5.4.0.3 |
| HGNC | HGNC:11603 |
| MGI | MGI:102556 |
| EntrezGene (human) | GeneID:9496 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:21387 (SSTAR profile) |
| UniProt ID (human) | TBX4_HUMAN |
| UniProt ID (mouse) | TBX4_MOUSE |
| UniProt AC (human) | P57082 (TFClass) |
| UniProt AC (mouse) | P70325 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | TBX4.H12INVIVO.0.PS.A.pcm |
| PWM | TBX4.H12INVIVO.0.PS.A.pwm |
| PFM | TBX4.H12INVIVO.0.PS.A.pfm |
| Alignment | TBX4.H12INVIVO.0.PS.A.words.tsv |
| Threshold to P-value map | TBX4.H12INVIVO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | TBX4.H12INVIVO.0.PS.A_jaspar_format.txt |
| MEME format | TBX4.H12INVIVO.0.PS.A_meme_format.meme |
| Transfac format | TBX4.H12INVIVO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 272.0 | 161.0 | 493.0 | 81.0 |
| 02 | 823.0 | 3.0 | 168.0 | 13.0 |
| 03 | 34.0 | 1.0 | 965.0 | 7.0 |
| 04 | 6.0 | 417.0 | 579.0 | 5.0 |
| 05 | 6.0 | 1.0 | 7.0 | 993.0 |
| 06 | 2.0 | 7.0 | 996.0 | 2.0 |
| 07 | 161.0 | 178.0 | 135.0 | 533.0 |
| 08 | 62.0 | 186.0 | 419.0 | 340.0 |
| 09 | 508.0 | 38.0 | 309.0 | 152.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.27 | 0.16 | 0.49 | 0.08 |
| 02 | 0.817 | 0.003 | 0.167 | 0.013 |
| 03 | 0.034 | 0.001 | 0.958 | 0.007 |
| 04 | 0.006 | 0.414 | 0.575 | 0.005 |
| 05 | 0.006 | 0.001 | 0.007 | 0.986 |
| 06 | 0.002 | 0.007 | 0.989 | 0.002 |
| 07 | 0.16 | 0.177 | 0.134 | 0.529 |
| 08 | 0.062 | 0.185 | 0.416 | 0.338 |
| 09 | 0.504 | 0.038 | 0.307 | 0.151 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.077 | -0.443 | 0.669 | -1.12 |
| 02 | 1.18 | -3.982 | -0.401 | -2.845 |
| 03 | -1.959 | -4.531 | 1.339 | -3.369 |
| 04 | -3.49 | 0.502 | 0.829 | -3.629 |
| 05 | -3.49 | -4.531 | -3.369 | 1.367 |
| 06 | -4.219 | -3.369 | 1.37 | -4.219 |
| 07 | -0.443 | -0.344 | -0.617 | 0.746 |
| 08 | -1.381 | -0.3 | 0.507 | 0.299 |
| 09 | 0.699 | -1.853 | 0.204 | -0.5 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.339105 |
| 0.0005 | 6.114795 |
| 0.0001 | 7.2963 |