MotifTBX4.H12INVITRO.1.S.B
Gene (human)TBX4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Tbx4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length23
ConsensusndAGGTGTKAndhnhvvMMYbhn
GC content45.4%
Information content (bits; total / per base)17.876 / 0.777
Data sourcesHT-SELEX
Aligned words6580

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (5) 0.637 0.64 0.462 0.468 0.598 0.602 1.414 1.433 8.638 12.284

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.964 0.961 0.861 0.861 0.725 0.741
best 0.999 0.999 0.948 0.947 0.79 0.808
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyTBX2-related {6.5.4} (TFClass)
TF subfamily {6.5.4.0} (TFClass)
TFClass IDTFClass: 6.5.4.0.3
HGNCHGNC:11603
MGIMGI:102556
EntrezGene (human)GeneID:9496
(SSTAR profile)
EntrezGene (mouse)GeneID:21387
(SSTAR profile)
UniProt ID (human)TBX4_HUMAN
UniProt ID (mouse)TBX4_MOUSE
UniProt AC (human)P57082
(TFClass)
UniProt AC (mouse)P70325
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
012136.01361.01655.01428.0
022989.5473.51873.51243.5
036345.019.0157.059.0
0489.041.06423.027.0
050.02.06578.00.0
060.060.09.06511.0
070.00.06580.00.0
08188.0164.035.06193.0
0981.0899.03949.01651.0
105784.069.0542.0185.0
112370.01161.01106.01943.0
123408.0525.0716.01931.0
131864.0579.0530.03607.0
141571.01245.01181.02583.0
151027.01243.0583.03727.0
161712.02956.01310.0602.0
173517.01191.01015.0857.0
18775.05165.0371.0269.0
193839.01326.01069.0346.0
20364.05024.0488.0704.0
21619.03269.0934.01758.0
22827.251176.25661.253915.25
231379.751695.751292.752211.75
PFM
ACGT
010.3250.2070.2520.217
020.4540.0720.2850.189
030.9640.0030.0240.009
040.0140.0060.9760.004
050.00.01.00.0
060.00.0090.0010.99
070.00.01.00.0
080.0290.0250.0050.941
090.0120.1370.60.251
100.8790.010.0820.028
110.360.1760.1680.295
120.5180.080.1090.293
130.2830.0880.0810.548
140.2390.1890.1790.393
150.1560.1890.0890.566
160.260.4490.1990.091
170.5340.1810.1540.13
180.1180.7850.0560.041
190.5830.2020.1620.053
200.0550.7640.0740.107
210.0940.4970.1420.267
220.1260.1790.10.595
230.210.2580.1960.336
PWM
ACGT
010.261-0.1890.006-0.141
020.597-1.2420.13-0.279
031.349-4.353-2.337-3.293
04-2.894-3.6411.361-4.033
05-6.619-5.9721.385-6.619
06-6.619-3.277-4.9911.375
07-6.619-6.6191.385-6.619
08-2.159-2.294-3.7911.325
09-2.986-0.6030.8750.004
101.256-3.141-1.108-2.175
110.365-0.348-0.3960.166
120.728-1.139-0.830.16
130.125-1.042-1.130.784
14-0.046-0.278-0.3310.451
15-0.47-0.28-1.0350.817
160.040.586-0.227-1.003
170.759-0.322-0.482-0.651
18-0.7511.143-1.485-1.804
190.847-0.215-0.43-1.554
20-1.5041.116-1.212-0.847
21-0.9750.686-0.5650.066
22-0.686-0.335-0.9090.866
23-0.1760.03-0.2410.296
Standard thresholds
P-value Threshold
0.001 0.82261
0.0005 2.33351
0.0001 5.43551