MotifTBX4.H12CORE.0.PS.A
Gene (human)TBX4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Tbx4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length9
ConsensusvAGSTGhbd
GC content55.86%
Information content (bits; total / per base)8.815 / 0.979
Data sourcesChIP-Seq + HT-SELEX
Aligned words1007

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (5) 0.698 0.71 0.544 0.555 0.672 0.678 1.729 1.755 32.0 39.155

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.916 0.895 0.815 0.798 0.697 0.701
best 0.975 0.963 0.897 0.882 0.758 0.763
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyTBX2-related {6.5.4} (TFClass)
TF subfamily {6.5.4.0} (TFClass)
TFClass IDTFClass: 6.5.4.0.3
HGNCHGNC:11603
MGIMGI:102556
EntrezGene (human)GeneID:9496
(SSTAR profile)
EntrezGene (mouse)GeneID:21387
(SSTAR profile)
UniProt ID (human)TBX4_HUMAN
UniProt ID (mouse)TBX4_MOUSE
UniProt AC (human)P57082
(TFClass)
UniProt AC (mouse)P70325
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01272.0161.0493.081.0
02823.03.0168.013.0
0334.01.0965.07.0
046.0417.0579.05.0
056.01.07.0993.0
062.07.0996.02.0
07161.0178.0135.0533.0
0862.0186.0419.0340.0
09508.038.0309.0152.0
PFM
ACGT
010.270.160.490.08
020.8170.0030.1670.013
030.0340.0010.9580.007
040.0060.4140.5750.005
050.0060.0010.0070.986
060.0020.0070.9890.002
070.160.1770.1340.529
080.0620.1850.4160.338
090.5040.0380.3070.151
PWM
ACGT
010.077-0.4430.669-1.12
021.18-3.982-0.401-2.845
03-1.959-4.5311.339-3.369
04-3.490.5020.829-3.629
05-3.49-4.531-3.3691.367
06-4.219-3.3691.37-4.219
07-0.443-0.344-0.6170.746
08-1.381-0.30.5070.299
090.699-1.8530.204-0.5
Standard thresholds
P-value Threshold
0.001 5.339105
0.0005 6.114795
0.0001 7.2963