MotifTBX20.H12INVIVO.1.M.C
Gene (human)TBX20
(GeneCards)
Gene synonyms (human)
Gene (mouse)Tbx20
Gene synonyms (mouse)Tbx12
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length11
ConsensusnRSGTGWKAdn
GC content49.83%
Information content (bits; total / per base)9.082 / 0.826
Data sourcesMethyl-HT-SELEX
Aligned words8276

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.601 0.613 0.417 0.427 0.573 0.579 1.242 1.269 6.252 7.187

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.971 0.955 0.902 0.888 0.782 0.781
best 0.991 0.987 0.971 0.961 0.889 0.88
Methyl HT-SELEX, 2 experiments median 0.918 0.893 0.841 0.816 0.748 0.735
best 0.967 0.949 0.925 0.899 0.829 0.811
Non-Methyl HT-SELEX, 4 experiments median 0.982 0.973 0.916 0.904 0.812 0.808
best 0.991 0.987 0.971 0.961 0.889 0.88

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.836 0.388 0.761 0.362
batch 2 0.765 0.573 0.747 0.614
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyTBX1-related {6.5.3} (TFClass)
TF subfamily {6.5.3.0} (TFClass)
TFClass IDTFClass: 6.5.3.0.5
HGNCHGNC:11598
MGIMGI:1888496
EntrezGene (human)GeneID:57057
(SSTAR profile)
EntrezGene (mouse)GeneID:57246
(SSTAR profile)
UniProt ID (human)TBX20_HUMAN
UniProt ID (mouse)TBX20_MOUSE
UniProt AC (human)Q9UMR3
(TFClass)
UniProt AC (mouse)Q9ES03
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
013083.751420.751985.751785.75
025309.75437.751624.75903.75
03821.01624.05414.0417.0
041.021.08254.00.0
057.02276.037.05956.0
063.00.08273.00.0
07755.0605.0385.06531.0
08393.0534.04990.02359.0
096761.0337.0732.0446.0
104105.25847.251598.251725.25
112496.751631.752338.751808.75
PFM
ACGT
010.3730.1720.240.216
020.6420.0530.1960.109
030.0990.1960.6540.05
040.00.0030.9970.0
050.0010.2750.0040.72
060.00.01.00.0
070.0910.0730.0470.789
080.0470.0650.6030.285
090.8170.0410.0880.054
100.4960.1020.1930.208
110.3020.1970.2830.219
PWM
ACGT
010.399-0.375-0.041-0.147
020.942-1.549-0.241-0.827
03-0.923-0.2420.961-1.597
04-6.456-4.4891.383-6.823
05-5.4110.095-3.9661.057
06-5.977-6.8231.385-6.823
07-1.006-1.227-1.6771.149
08-1.656-1.3510.880.131
091.183-1.809-1.037-1.531
100.685-0.891-0.258-0.181
110.188-0.2370.122-0.134
Standard thresholds
P-value Threshold
0.001 5.064125
0.0005 5.832405
0.0001 7.28848