MotifTBX19.H12CORE.1.SM.B
Gene (human)TBX19
(GeneCards)
Gene synonyms (human)TPIT
Gene (mouse)Tbx19
Gene synonyms (mouse)Tpit
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length13
ConsensusdAGGTGYKAhddh
GC content41.55%
Information content (bits; total / per base)13.141 / 1.011
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9850

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (9) 0.733 0.755 0.571 0.604 0.677 0.687 1.753 1.805 66.337 70.137

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.995 0.992 0.988 0.982 0.944 0.939
best 0.998 0.997 0.995 0.993 0.99 0.985
Methyl HT-SELEX, 1 experiments median 0.996 0.992 0.993 0.988 0.985 0.978
best 0.996 0.992 0.993 0.988 0.985 0.978
Non-Methyl HT-SELEX, 3 experiments median 0.994 0.992 0.983 0.977 0.903 0.899
best 0.998 0.997 0.995 0.993 0.99 0.985
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyBrachyury-related {6.5.1} (TFClass)
TF subfamily {6.5.1.0} (TFClass)
TFClass IDTFClass: 6.5.1.0.2
HGNCHGNC:11596
MGIMGI:1891158
EntrezGene (human)GeneID:9095
(SSTAR profile)
EntrezGene (mouse)GeneID:83993
(SSTAR profile)
UniProt ID (human)TBX19_HUMAN
UniProt ID (mouse)TBX19_MOUSE
UniProt AC (human)O60806
(TFClass)
UniProt AC (mouse)Q99ME7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
013372.25996.252394.253087.25
029111.7558.75538.75140.75
03468.0765.08164.0453.0
04100.03.09739.08.0
050.0399.05.09446.0
060.00.09850.00.0
07455.02465.036.06894.0
0885.0637.06946.02182.0
099714.03.0128.05.0
105336.01387.01037.02090.0
114569.0859.01363.03059.0
122262.25744.251423.255420.25
131722.751690.751576.754859.75
PFM
ACGT
010.3420.1010.2430.313
020.9250.0060.0550.014
030.0480.0780.8290.046
040.010.00.9890.001
050.00.0410.0010.959
060.00.01.00.0
070.0460.250.0040.7
080.0090.0650.7050.222
090.9860.00.0130.001
100.5420.1410.1050.212
110.4640.0870.1380.311
120.230.0760.1440.55
130.1750.1720.160.493
PWM
ACGT
010.314-0.904-0.0280.226
021.308-3.698-1.516-2.847
03-1.656-1.1671.198-1.689
04-3.182-6.1421.374-5.478
05-6.977-1.815-5.8221.344
06-6.977-6.9771.386-6.977
07-1.6850.001-4.1641.029
08-3.341-1.3491.036-0.121
091.372-6.142-2.94-5.822
100.773-0.573-0.864-0.164
110.618-1.051-0.5910.217
12-0.085-1.194-0.5480.788
13-0.357-0.376-0.4450.679
Standard thresholds
P-value Threshold
0.001 3.31106
0.0005 4.61996
0.0001 7.121235