MotifTBX19.H12CORE.0.PS.A
Gene (human)TBX19
(GeneCards)
Gene synonyms (human)TPIT
Gene (mouse)Tbx19
Gene synonyms (mouse)Tpit
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length22
ConsensusddTvdCRhnWRKGTGYKAWddn
GC content42.51%
Information content (bits; total / per base)16.294 / 0.741
Data sourcesChIP-Seq + HT-SELEX
Aligned words7617

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (9) 0.86 0.87 0.786 0.79 0.821 0.83 3.05 3.091 284.699 325.284

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.998 0.997 0.991 0.988 0.95 0.949
best 1.0 1.0 1.0 1.0 0.974 0.966
Methyl HT-SELEX, 1 experiments median 0.998 0.996 0.991 0.988 0.97 0.962
best 0.998 0.996 0.991 0.988 0.97 0.962
Non-Methyl HT-SELEX, 3 experiments median 0.999 0.998 0.992 0.988 0.929 0.936
best 1.0 1.0 1.0 1.0 0.974 0.966
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyBrachyury-related {6.5.1} (TFClass)
TF subfamily {6.5.1.0} (TFClass)
TFClass IDTFClass: 6.5.1.0.2
HGNCHGNC:11596
MGIMGI:1891158
EntrezGene (human)GeneID:9095
(SSTAR profile)
EntrezGene (mouse)GeneID:83993
(SSTAR profile)
UniProt ID (human)TBX19_HUMAN
UniProt ID (mouse)TBX19_MOUSE
UniProt AC (human)O60806
(TFClass)
UniProt AC (mouse)Q99ME7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
011775.51269.51525.53046.5
021306.01024.01437.03850.0
03305.0480.0265.06567.0
042129.03535.01370.0583.0
053839.0390.02502.0886.0
06295.06701.0269.0352.0
075727.0286.01349.0255.0
08919.04067.0772.01859.0
091969.02151.02274.01223.0
101318.0721.0919.04659.0
115886.0269.0948.0514.0
12813.0947.04731.01126.0
13563.068.06857.0129.0
143.0198.083.07333.0
157.01.07603.06.0
16279.01627.097.05614.0
17119.0307.05798.01393.0
187363.067.0132.055.0
194692.0844.0838.01243.0
203934.0932.0962.01789.0
212571.75735.75909.753399.75
222014.751562.751414.752624.75
PFM
ACGT
010.2330.1670.20.4
020.1710.1340.1890.505
030.040.0630.0350.862
040.280.4640.180.077
050.5040.0510.3280.116
060.0390.880.0350.046
070.7520.0380.1770.033
080.1210.5340.1010.244
090.2590.2820.2990.161
100.1730.0950.1210.612
110.7730.0350.1240.067
120.1070.1240.6210.148
130.0740.0090.90.017
140.00.0260.0110.963
150.0010.00.9980.001
160.0370.2140.0130.737
170.0160.040.7610.183
180.9670.0090.0170.007
190.6160.1110.110.163
200.5160.1220.1260.235
210.3380.0970.1190.446
220.2650.2050.1860.345
PWM
ACGT
01-0.07-0.405-0.2210.469
02-0.377-0.619-0.2810.703
03-1.825-1.375-1.9651.237
040.1110.618-0.329-1.181
050.701-1.5810.273-0.764
06-1.8581.257-1.95-1.683
071.1-1.889-0.344-2.003
08-0.7270.758-0.901-0.024
090.0330.1220.177-0.442
10-0.367-0.969-0.7270.894
111.128-1.95-0.696-1.306
12-0.85-0.6970.909-0.525
13-1.216-3.3011.28-2.676
14-5.898-2.254-3.1081.347
15-5.33-6.3791.384-5.445
16-1.914-0.157-2.9561.08
17-2.755-1.8191.113-0.312
181.352-3.316-2.653-3.506
190.901-0.812-0.819-0.426
200.725-0.713-0.682-0.062
210.3-0.949-0.7370.579
220.056-0.197-0.2970.321
Standard thresholds
P-value Threshold
0.001 2.51281
0.0005 3.71926
0.0001 6.23126