| Motif | TBX18.H12RSNP.0.M.D |
| Gene (human) | TBX18 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tbx18 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TBX18.H12RSNP.0.M.D |
| Gene (human) | TBX18 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Tbx18 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | ndAGGTGTKAdn |
| GC content | 48.18% |
| Information content (bits; total / per base) | 11.834 / 0.986 |
| Data sources | Methyl-HT-SELEX |
| Aligned words | 6817 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Methyl HT-SELEX, 1 experiments | median | 0.944 | 0.923 | 0.864 | 0.837 | 0.764 | 0.747 |
| best | 0.944 | 0.923 | 0.864 | 0.837 | 0.764 | 0.747 | |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | T-Box factors {6.5} (TFClass) |
| TF family | TBX1-related {6.5.3} (TFClass) |
| TF subfamily | {6.5.3.0} (TFClass) |
| TFClass ID | TFClass: 6.5.3.0.4 |
| HGNC | HGNC:11595 |
| MGI | MGI:1923615 |
| EntrezGene (human) | GeneID:9096 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:76365 (SSTAR profile) |
| UniProt ID (human) | TBX18_HUMAN |
| UniProt ID (mouse) | TBX18_MOUSE |
| UniProt AC (human) | O95935 (TFClass) |
| UniProt AC (mouse) | Q9EPZ6 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 1 |
| PCM | TBX18.H12RSNP.0.M.D.pcm |
| PWM | TBX18.H12RSNP.0.M.D.pwm |
| PFM | TBX18.H12RSNP.0.M.D.pfm |
| Alignment | TBX18.H12RSNP.0.M.D.words.tsv |
| Threshold to P-value map | TBX18.H12RSNP.0.M.D.thr |
| Motif in other formats | |
| JASPAR format | TBX18.H12RSNP.0.M.D_jaspar_format.txt |
| MEME format | TBX18.H12RSNP.0.M.D_meme_format.meme |
| Transfac format | TBX18.H12RSNP.0.M.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1740.5 | 1217.5 | 1896.5 | 1962.5 |
| 02 | 3065.75 | 511.75 | 1956.75 | 1282.75 |
| 03 | 5807.0 | 76.0 | 725.0 | 209.0 |
| 04 | 108.0 | 372.0 | 6311.0 | 26.0 |
| 05 | 0.0 | 1.0 | 6816.0 | 0.0 |
| 06 | 0.0 | 1434.0 | 12.0 | 5371.0 |
| 07 | 0.0 | 0.0 | 6816.0 | 1.0 |
| 08 | 455.0 | 286.0 | 105.0 | 5971.0 |
| 09 | 120.0 | 750.0 | 4315.0 | 1632.0 |
| 10 | 5897.0 | 81.0 | 644.0 | 195.0 |
| 11 | 3736.25 | 674.25 | 1273.25 | 1133.25 |
| 12 | 2395.75 | 1193.75 | 1945.75 | 1281.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.255 | 0.179 | 0.278 | 0.288 |
| 02 | 0.45 | 0.075 | 0.287 | 0.188 |
| 03 | 0.852 | 0.011 | 0.106 | 0.031 |
| 04 | 0.016 | 0.055 | 0.926 | 0.004 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 0.21 | 0.002 | 0.788 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.067 | 0.042 | 0.015 | 0.876 |
| 09 | 0.018 | 0.11 | 0.633 | 0.239 |
| 10 | 0.865 | 0.012 | 0.094 | 0.029 |
| 11 | 0.548 | 0.099 | 0.187 | 0.166 |
| 12 | 0.351 | 0.175 | 0.285 | 0.188 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.021 | -0.336 | 0.107 | 0.141 |
| 02 | 0.587 | -1.2 | 0.138 | -0.284 |
| 03 | 1.225 | -3.083 | -0.853 | -2.089 |
| 04 | -2.74 | -1.517 | 1.308 | -4.103 |
| 05 | -6.651 | -6.277 | 1.385 | -6.651 |
| 06 | -6.651 | -0.172 | -4.788 | 1.147 |
| 07 | -6.651 | -6.651 | 1.385 | -6.277 |
| 08 | -1.317 | -1.778 | -2.767 | 1.253 |
| 09 | -2.636 | -0.819 | 0.928 | -0.043 |
| 10 | 1.24 | -3.021 | -0.971 | -2.158 |
| 11 | 0.784 | -0.925 | -0.291 | -0.407 |
| 12 | 0.34 | -0.355 | 0.132 | -0.284 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.107915 |
| 0.0005 | 5.21938 |
| 0.0001 | 7.342 |