MotifTBX18.H12CORE.0.M.C
Gene (human)TBX18
(GeneCards)
Gene synonyms (human)
Gene (mouse)Tbx18
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length12
ConsensusndAGGTGTKAdn
GC content48.18%
Information content (bits; total / per base)11.834 / 0.986
Data sourcesMethyl-HT-SELEX
Aligned words6817

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Methyl HT-SELEX, 1 experiments median 0.944 0.923 0.864 0.837 0.764 0.747
best 0.944 0.923 0.864 0.837 0.764 0.747
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyTBX1-related {6.5.3} (TFClass)
TF subfamily {6.5.3.0} (TFClass)
TFClass IDTFClass: 6.5.3.0.4
HGNCHGNC:11595
MGIMGI:1923615
EntrezGene (human)GeneID:9096
(SSTAR profile)
EntrezGene (mouse)GeneID:76365
(SSTAR profile)
UniProt ID (human)TBX18_HUMAN
UniProt ID (mouse)TBX18_MOUSE
UniProt AC (human)O95935
(TFClass)
UniProt AC (mouse)Q9EPZ6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 1
PCM
ACGT
011740.51217.51896.51962.5
023065.75511.751956.751282.75
035807.076.0725.0209.0
04108.0372.06311.026.0
050.01.06816.00.0
060.01434.012.05371.0
070.00.06816.01.0
08455.0286.0105.05971.0
09120.0750.04315.01632.0
105897.081.0644.0195.0
113736.25674.251273.251133.25
122395.751193.751945.751281.75
PFM
ACGT
010.2550.1790.2780.288
020.450.0750.2870.188
030.8520.0110.1060.031
040.0160.0550.9260.004
050.00.01.00.0
060.00.210.0020.788
070.00.01.00.0
080.0670.0420.0150.876
090.0180.110.6330.239
100.8650.0120.0940.029
110.5480.0990.1870.166
120.3510.1750.2850.188
PWM
ACGT
010.021-0.3360.1070.141
020.587-1.20.138-0.284
031.225-3.083-0.853-2.089
04-2.74-1.5171.308-4.103
05-6.651-6.2771.385-6.651
06-6.651-0.172-4.7881.147
07-6.651-6.6511.385-6.277
08-1.317-1.778-2.7671.253
09-2.636-0.8190.928-0.043
101.24-3.021-0.971-2.158
110.784-0.925-0.291-0.407
120.34-0.3550.132-0.284
Standard thresholds
P-value Threshold
0.001 4.107915
0.0005 5.21938
0.0001 7.342