MotifTBX1.H12CORE.0.S.B
Gene (human)TBX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Tbx1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusndRGGTGKGARRddn
GC content50.02%
Information content (bits; total / per base)13.743 / 0.916
Data sourcesHT-SELEX
Aligned words5392

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 3 experiments median 0.718 0.689 0.641 0.621 0.591 0.581
best 0.823 0.793 0.713 0.693 0.627 0.625
TF superclassImmunoglobulin fold {6} (TFClass)
TF classT-Box factors {6.5} (TFClass)
TF familyTBX1-related {6.5.3} (TFClass)
TF subfamily {6.5.3.0} (TFClass)
TFClass IDTFClass: 6.5.3.0.1
HGNCHGNC:11592
MGIMGI:98493
EntrezGene (human)GeneID:6899
(SSTAR profile)
EntrezGene (mouse)GeneID:21380
(SSTAR profile)
UniProt ID (human)TBX1_HUMAN
UniProt ID (mouse)TBX1_MOUSE
UniProt AC (human)O43435
(TFClass)
UniProt AC (mouse)P70323
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 0
PCM
ACGT
011684.5893.51469.51344.5
022086.75571.751559.751173.75
033390.097.01738.0167.0
04219.064.05008.0101.0
055.01.05385.01.0
0674.0136.08.05174.0
074.00.05388.00.0
0840.0134.01486.03732.0
0911.04.05295.082.0
104387.0712.0129.0164.0
113825.0105.01017.0445.0
122711.0253.01983.0445.0
131827.0188.01926.01451.0
141506.0511.01549.01826.0
151363.25912.251932.251184.25
PFM
ACGT
010.3120.1660.2730.249
020.3870.1060.2890.218
030.6290.0180.3220.031
040.0410.0120.9290.019
050.0010.00.9990.0
060.0140.0250.0010.96
070.0010.00.9990.0
080.0070.0250.2760.692
090.0020.0010.9820.015
100.8140.1320.0240.03
110.7090.0190.1890.083
120.5030.0470.3680.083
130.3390.0350.3570.269
140.2790.0950.2870.339
150.2530.1690.3580.22
PWM
ACGT
010.223-0.410.086-0.003
020.436-0.8560.146-0.138
030.921-2.6110.254-2.077
04-1.809-3.0161.311-2.572
05-5.241-6.0611.384-6.061
06-2.875-2.28-4.8911.344
07-5.392-6.4431.384-6.443
08-3.467-2.2940.0971.017
09-4.632-5.3921.367-2.775
101.179-0.637-2.332-2.095
111.042-2.534-0.281-1.105
120.698-1.6660.385-1.105
130.304-1.960.3560.074
140.111-0.9670.1390.303
150.011-0.390.36-0.129
Standard thresholds
P-value Threshold
0.001 2.99491
0.0005 4.29231
0.0001 6.90921