MotifTBP.H12INVITRO.0.P.D
Gene (human)TBP
(GeneCards)
Gene synonyms (human)GTF2D1, TF2D, TFIID
Gene (mouse)Tbp
Gene synonyms (mouse)Tfiid
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length10
ConsensusvTATAAAARv
GC content25.02%
Information content (bits; total / per base)11.199 / 1.12
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.621 0.649 0.48 0.521 0.675 0.72 2.064 2.223 76.224 102.509
Mouse 11 (73) 0.602 0.807 0.481 0.738 0.666 0.887 2.027 4.046 60.367 292.62
TF superclassbeta-Sheet binding to DNA {8} (TFClass)
TF classTATA-binding proteins {8.1} (TFClass)
TF familyTBP-related {8.1.1} (TFClass)
TF subfamily {8.1.1.0} (TFClass)
TFClass IDTFClass: 8.1.1.0.1
HGNCHGNC:11588
MGIMGI:101838
EntrezGene (human)GeneID:6908
(SSTAR profile)
EntrezGene (mouse)GeneID:21374
(SSTAR profile)
UniProt ID (human)TBP_HUMAN
UniProt ID (mouse)TBP_MOUSE
UniProt AC (human)P20226
(TFClass)
UniProt AC (mouse)P29037
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 11 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01132.0568.0219.078.0
0267.034.024.0872.0
03841.07.010.0139.0
0425.014.018.0940.0
05922.01.02.072.0
06685.01.09.0302.0
07959.06.028.04.0
08830.05.063.099.0
09279.019.0652.047.0
10135.0299.0515.048.0
PFM
ACGT
010.1320.570.220.078
020.0670.0340.0240.875
030.8440.0070.010.139
040.0250.0140.0180.943
050.9250.0010.0020.072
060.6870.0010.0090.303
070.9620.0060.0280.004
080.8320.0050.0630.099
090.280.0190.6540.047
100.1350.30.5170.048
PWM
ACGT
01-0.630.82-0.128-1.147
02-1.295-1.949-2.2781.247
031.211-3.359-3.064-0.579
04-2.24-2.77-2.5431.322
051.303-4.522-4.21-1.225
061.007-4.522-3.1530.191
071.342-3.481-2.133-3.78
081.198-3.619-1.355-0.913
090.112-2.4940.957-1.639
10-0.6070.1810.722-1.619
Standard thresholds
P-value Threshold
0.001 4.434935
0.0005 5.37505
0.0001 7.231335