| Motif | TBP.H12INVITRO.0.P.D |
| Gene (human) | TBP (GeneCards) |
| Gene synonyms (human) | GTF2D1, TF2D, TFIID |
| Gene (mouse) | Tbp |
| Gene synonyms (mouse) | Tfiid |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | TBP.H12INVITRO.0.P.D |
| Gene (human) | TBP (GeneCards) |
| Gene synonyms (human) | GTF2D1, TF2D, TFIID |
| Gene (mouse) | Tbp |
| Gene synonyms (mouse) | Tfiid |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | vTATAAAARv |
| GC content | 25.02% |
| Information content (bits; total / per base) | 11.199 / 1.12 |
| Data sources | ChIP-Seq |
| Aligned words | 997 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (12) | 0.621 | 0.649 | 0.48 | 0.521 | 0.675 | 0.72 | 2.064 | 2.223 | 76.224 | 102.509 |
| Mouse | 11 (73) | 0.602 | 0.807 | 0.481 | 0.738 | 0.666 | 0.887 | 2.027 | 4.046 | 60.367 | 292.62 |
| TF superclass | beta-Sheet binding to DNA {8} (TFClass) |
| TF class | TATA-binding proteins {8.1} (TFClass) |
| TF family | TBP-related {8.1.1} (TFClass) |
| TF subfamily | {8.1.1.0} (TFClass) |
| TFClass ID | TFClass: 8.1.1.0.1 |
| HGNC | HGNC:11588 |
| MGI | MGI:101838 |
| EntrezGene (human) | GeneID:6908 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:21374 (SSTAR profile) |
| UniProt ID (human) | TBP_HUMAN |
| UniProt ID (mouse) | TBP_MOUSE |
| UniProt AC (human) | P20226 (TFClass) |
| UniProt AC (mouse) | P29037 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 11 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | TBP.H12INVITRO.0.P.D.pcm |
| PWM | TBP.H12INVITRO.0.P.D.pwm |
| PFM | TBP.H12INVITRO.0.P.D.pfm |
| Alignment | TBP.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | TBP.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | TBP.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | TBP.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | TBP.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 132.0 | 568.0 | 219.0 | 78.0 |
| 02 | 67.0 | 34.0 | 24.0 | 872.0 |
| 03 | 841.0 | 7.0 | 10.0 | 139.0 |
| 04 | 25.0 | 14.0 | 18.0 | 940.0 |
| 05 | 922.0 | 1.0 | 2.0 | 72.0 |
| 06 | 685.0 | 1.0 | 9.0 | 302.0 |
| 07 | 959.0 | 6.0 | 28.0 | 4.0 |
| 08 | 830.0 | 5.0 | 63.0 | 99.0 |
| 09 | 279.0 | 19.0 | 652.0 | 47.0 |
| 10 | 135.0 | 299.0 | 515.0 | 48.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.132 | 0.57 | 0.22 | 0.078 |
| 02 | 0.067 | 0.034 | 0.024 | 0.875 |
| 03 | 0.844 | 0.007 | 0.01 | 0.139 |
| 04 | 0.025 | 0.014 | 0.018 | 0.943 |
| 05 | 0.925 | 0.001 | 0.002 | 0.072 |
| 06 | 0.687 | 0.001 | 0.009 | 0.303 |
| 07 | 0.962 | 0.006 | 0.028 | 0.004 |
| 08 | 0.832 | 0.005 | 0.063 | 0.099 |
| 09 | 0.28 | 0.019 | 0.654 | 0.047 |
| 10 | 0.135 | 0.3 | 0.517 | 0.048 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.63 | 0.82 | -0.128 | -1.147 |
| 02 | -1.295 | -1.949 | -2.278 | 1.247 |
| 03 | 1.211 | -3.359 | -3.064 | -0.579 |
| 04 | -2.24 | -2.77 | -2.543 | 1.322 |
| 05 | 1.303 | -4.522 | -4.21 | -1.225 |
| 06 | 1.007 | -4.522 | -3.153 | 0.191 |
| 07 | 1.342 | -3.481 | -2.133 | -3.78 |
| 08 | 1.198 | -3.619 | -1.355 | -0.913 |
| 09 | 0.112 | -2.494 | 0.957 | -1.639 |
| 10 | -0.607 | 0.181 | 0.722 | -1.619 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.434935 |
| 0.0005 | 5.37505 |
| 0.0001 | 7.231335 |