MotifTAL1.H12INVIVO.2.P.B
Gene (human)TAL1
(GeneCards)
Gene synonyms (human)BHLHA17, SCL, TCL5
Gene (mouse)Tal1
Gene synonyms (mouse)Scl, Tal-1
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
B
Motif length14
ConsensusvnRvhRRCAGvTGb
GC content51.83%
Information content (bits; total / per base)9.878 / 0.706
Data sourcesChIP-Seq
Aligned words1020

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 27 (163) 0.669 0.799 0.488 0.736 0.638 0.778 1.559 2.888 29.009 86.092
Mouse 33 (190) 0.632 0.775 0.462 0.675 0.635 0.758 1.589 2.742 25.493 96.854

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 1.336 0.738 0.026 0.052
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTAL-HEN {1.2.3.1} (TFClass)
TFClass IDTFClass: 1.2.3.1.1
HGNCHGNC:11556
MGIMGI:98480
EntrezGene (human)GeneID:6886
(SSTAR profile)
EntrezGene (mouse)GeneID:21349
(SSTAR profile)
UniProt ID (human)TAL1_HUMAN
UniProt ID (mouse)TAL1_MOUSE
UniProt AC (human)P17542
(TFClass)
UniProt AC (mouse)P22091
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 27 human, 33 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01277.0452.0190.0101.0
02604.0128.0128.0160.0
03210.067.0660.083.0
04295.0178.0519.028.0
05606.0139.0116.0159.0
06687.075.0169.089.0
07496.0103.0393.028.0
0816.0971.021.012.0
09969.010.010.031.0
1022.0116.0811.071.0
11372.0441.0164.043.0
1290.035.048.0847.0
1373.029.0817.0101.0
1486.0241.0370.0323.0
PFM
ACGT
010.2720.4430.1860.099
020.5920.1250.1250.157
030.2060.0660.6470.081
040.2890.1750.5090.027
050.5940.1360.1140.156
060.6740.0740.1660.087
070.4860.1010.3850.027
080.0160.9520.0210.012
090.950.010.010.03
100.0220.1140.7950.07
110.3650.4320.1610.042
120.0880.0340.0470.83
130.0720.0280.8010.099
140.0840.2360.3630.317
PWM
ACGT
010.0820.569-0.292-0.916
020.858-0.683-0.683-0.462
03-0.193-1.3180.947-1.109
040.145-0.3570.707-2.156
050.862-0.601-0.78-0.468
060.987-1.208-0.408-1.04
070.662-0.8970.43-2.156
08-2.6731.332-2.424-2.928
091.33-3.086-3.086-2.06
10-2.381-0.781.152-1.261
110.3760.545-0.438-1.747
12-1.029-1.944-1.6411.196
13-1.234-2.1231.16-0.916
14-1.074-0.0560.370.235
Standard thresholds
P-value Threshold
0.001 4.72521
0.0005 5.52801
0.0001 7.18246