MotifTAL1.H12INVIVO.1.P.B
Gene (human)TAL1
(GeneCards)
Gene synonyms (human)BHLHA17, SCL, TCL5
Gene (mouse)Tal1
Gene synonyms (mouse)Scl, Tal-1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length14
ConsensusdvhdvSAGMWRdbv
GC content49.4%
Information content (bits; total / per base)7.455 / 0.533
Data sourcesChIP-Seq
Aligned words1015

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 27 (163) 0.716 0.755 0.534 0.58 0.714 0.74 1.853 2.001 35.18 65.77
Mouse 33 (190) 0.701 0.755 0.511 0.58 0.704 0.745 1.789 2.017 29.262 55.167

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.107 3.339 0.142 0.114
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTAL-HEN {1.2.3.1} (TFClass)
TFClass IDTFClass: 1.2.3.1.1
HGNCHGNC:11556
MGIMGI:98480
EntrezGene (human)GeneID:6886
(SSTAR profile)
EntrezGene (mouse)GeneID:21349
(SSTAR profile)
UniProt ID (human)TAL1_HUMAN
UniProt ID (mouse)TAL1_MOUSE
UniProt AC (human)P17542
(TFClass)
UniProt AC (mouse)P22091
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 27 human, 33 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01347.089.0404.0175.0
02206.0249.0458.0102.0
03467.0192.0153.0203.0
04397.0116.0314.0188.0
05409.0102.0417.087.0
0678.0730.0198.09.0
07803.04.011.0197.0
081.037.0969.08.0
09560.0312.0136.07.0
10289.032.09.0685.0
11429.036.0527.023.0
12442.048.0284.0241.0
13117.0198.0497.0203.0
14408.0210.0288.0109.0
PFM
ACGT
010.3420.0880.3980.172
020.2030.2450.4510.1
030.460.1890.1510.2
040.3910.1140.3090.185
050.4030.10.4110.086
060.0770.7190.1950.009
070.7910.0040.0110.194
080.0010.0360.9550.008
090.5520.3070.1340.007
100.2850.0320.0090.675
110.4230.0350.5190.023
120.4350.0470.280.237
130.1150.1950.490.2
140.4020.2070.2840.107
PWM
ACGT
010.311-1.0350.463-0.369
02-0.207-0.0190.587-0.901
030.607-0.277-0.501-0.221
040.445-0.7750.212-0.298
050.475-0.9010.494-1.058
06-1.1641.052-0.246-3.17
071.147-3.797-2.999-0.251
08-4.539-1.8871.335-3.268
090.7880.205-0.618-3.376
100.129-2.025-3.170.989
110.522-1.9130.727-2.335
120.552-1.6370.112-0.051
13-0.766-0.2460.669-0.221
140.472-0.1880.126-0.836
Standard thresholds
P-value Threshold
0.001 5.14791
0.0005 5.76546
0.0001 6.94171