MotifTAL1.H12INVITRO.0.P.D
Gene (human)TAL1
(GeneCards)
Gene synonyms (human)BHLHA17, SCL, TCL5
Gene (mouse)Tal1
Gene synonyms (mouse)Scl, Tal-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length19
ConsensusbbKbnnnnnvvWGATAASv
GC content48.78%
Information content (bits; total / per base)12.215 / 0.643
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 27 (163) 0.92 0.974 0.876 0.951 0.9 0.96 4.094 4.694 237.0 428.161
Mouse 33 (190) 0.907 0.969 0.855 0.938 0.903 0.963 4.034 4.826 215.994 392.174

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 4.177 9.823 0.245 0.189
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTAL-HEN {1.2.3.1} (TFClass)
TFClass IDTFClass: 1.2.3.1.1
HGNCHGNC:11556
MGIMGI:98480
EntrezGene (human)GeneID:6886
(SSTAR profile)
EntrezGene (mouse)GeneID:21349
(SSTAR profile)
UniProt ID (human)TAL1_HUMAN
UniProt ID (mouse)TAL1_MOUSE
UniProt AC (human)P17542
(TFClass)
UniProt AC (mouse)P22091
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 27 human, 33 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0187.0499.0241.0174.0
0265.0207.0154.0575.0
0331.057.0632.0281.0
0484.0218.0505.0194.0
05179.0253.0309.0260.0
06213.0234.0297.0257.0
07208.0259.0357.0177.0
08209.0277.0312.0203.0
09210.0281.0278.0232.0
10335.0172.0347.0147.0
11153.0426.0322.0100.0
12663.013.017.0308.0
132.00.0999.00.0
14991.04.02.04.0
152.015.06.0978.0
16942.05.08.046.0
17852.016.0117.016.0
18121.0229.0593.058.0
19342.0227.0390.042.0
PFM
ACGT
010.0870.4990.2410.174
020.0650.2070.1540.574
030.0310.0570.6310.281
040.0840.2180.5040.194
050.1790.2530.3090.26
060.2130.2340.2970.257
070.2080.2590.3570.177
080.2090.2770.3120.203
090.210.2810.2780.232
100.3350.1720.3470.147
110.1530.4260.3220.1
120.6620.0130.0170.308
130.0020.00.9980.0
140.990.0040.0020.004
150.0020.0150.0060.977
160.9410.0050.0080.046
170.8510.0160.1170.016
180.1210.2290.5920.058
190.3420.2270.390.042
PWM
ACGT
01-1.0440.687-0.037-0.36
02-1.329-0.188-0.4810.828
03-2.041-1.4560.9220.115
04-1.078-0.1370.699-0.253
05-0.3320.0110.210.038
06-0.16-0.0670.170.026
07-0.1840.0340.353-0.343
08-0.1790.1010.219-0.208
09-0.1740.1150.104-0.075
100.29-0.3720.325-0.527
11-0.4880.5290.251-0.907
120.97-2.84-2.5990.206
13-4.214-4.9831.379-4.983
141.371-3.784-4.214-3.784
15-4.214-2.712-3.4851.358
161.32-3.623-3.254-1.664
171.22-2.654-0.753-2.654
18-0.719-0.0880.859-1.44
190.311-0.0970.441-1.751
Standard thresholds
P-value Threshold
0.001 4.00561
0.0005 5.09096
0.0001 7.29436