TAF1.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TAF1.H12RSNP.0.P.D
Gene (human)	TAF1 (GeneCards)
Gene synonyms (human)	BA2R, CCG1, CCGS, TAF2A
Gene (mouse)	Taf1
Gene synonyms (mouse)	Ccg1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	vRRRAWGGCKSMbvb
GC content	64.47%
Information content (bits; total / per base)	11.336 / 0.756
Data sources	ChIP-Seq
Aligned words	577

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	17 (113)	0.747	0.815	0.608	0.714	0.712	0.789	2.744	3.61	42.886	156.387

TF superclass	Other all-alpha-helical DNA-binding domains {4} (TFClass)
TF class	High-mobility group (HMG) domain factors {4.1} (TFClass)
TF family	TCF7-related {4.1.3} (TFClass)
TF subfamily	{4.1.3.0} (TFClass)
TFClass ID	TFClass: 4.1.3.0.5
HGNC	HGNC:11535
MGI	MGI:1336878
EntrezGene (human)	GeneID:6872 (SSTAR profile)
EntrezGene (mouse)	GeneID:270627 (SSTAR profile)
UniProt ID (human)	TAF1_HUMAN
UniProt ID (mouse)	TAF1_MOUSE
UniProt AC (human)	P21675 (TFClass)
UniProt AC (mouse)	Q80UV9 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	17 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	TAF1.H12RSNP.0.P.D.pcm
PWM	TAF1.H12RSNP.0.P.D.pwm
PFM	TAF1.H12RSNP.0.P.D.pfm
Alignment	TAF1.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	TAF1.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	TAF1.H12RSNP.0.P.D_jaspar_format.txt
MEME format	TAF1.H12RSNP.0.P.D_meme_format.meme
Transfac format	TAF1.H12RSNP.0.P.D_transfac_format.txt
Homer format	TAF1.H12RSNP.0.P.D_homer_format_0.001.txt TAF1.H12RSNP.0.P.D_homer_format_0.0005.txt TAF1.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	79.0	270.0	173.0	55.0
02	395.0	29.0	144.0	9.0
03	408.0	61.0	70.0	38.0
04	143.0	78.0	330.0	26.0
05	463.0	53.0	45.0	16.0
06	60.0	54.0	30.0	433.0
07	40.0	7.0	507.0	23.0
08	1.0	5.0	567.0	4.0
09	81.0	482.0	6.0	8.0
10	55.0	42.0	419.0	61.0
11	34.0	71.0	449.0	23.0
12	88.0	386.0	47.0	56.0
13	83.0	112.0	294.0	88.0
14	77.0	147.0	296.0	57.0
15	76.0	287.0	119.0	95.0

PFM

	A	C	G	T
01	0.137	0.468	0.3	0.095
02	0.685	0.05	0.25	0.016
03	0.707	0.106	0.121	0.066
04	0.248	0.135	0.572	0.045
05	0.802	0.092	0.078	0.028
06	0.104	0.094	0.052	0.75
07	0.069	0.012	0.879	0.04
08	0.002	0.009	0.983	0.007
09	0.14	0.835	0.01	0.014
10	0.095	0.073	0.726	0.106
11	0.059	0.123	0.778	0.04
12	0.153	0.669	0.081	0.097
13	0.144	0.194	0.51	0.153
14	0.133	0.255	0.513	0.099
15	0.132	0.497	0.206	0.165

PWM

	A	C	G	T
01	-0.593	0.622	0.18	-0.947
02	1.0	-1.562	-0.002	-2.623
03	1.033	-0.846	-0.712	-1.304
04	-0.009	-0.606	0.821	-1.665
05	1.159	-0.983	-1.141	-2.115
06	-0.862	-0.965	-1.53	1.092
07	-1.255	-2.832	1.249	-1.78
08	-4.031	-3.097	1.361	-3.262
09	-0.569	1.199	-2.956	-2.722
10	-0.947	-1.208	1.059	-0.846
11	-1.41	-0.698	1.128	-1.78
12	-0.487	0.977	-1.099	-0.929
13	-0.545	-0.25	0.706	-0.487
14	-0.618	0.019	0.713	-0.912
15	-0.631	0.682	-0.19	-0.412

Standard thresholds

P-value	Threshold
0.001	4.45451
0.0005	5.31541
0.0001	7.11141