MotifTAF1.H12INVIVO.0.P.B
Gene (human)TAF1
(GeneCards)
Gene synonyms (human)BA2R, CCG1, CCGS, TAF2A
Gene (mouse)Taf1
Gene synonyms (mouse)Ccg1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusvRRRAWGGCKSMbvb
GC content64.47%
Information content (bits; total / per base)11.336 / 0.756
Data sourcesChIP-Seq
Aligned words577

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 17 (113) 0.747 0.815 0.608 0.714 0.712 0.789 2.744 3.61 42.886 156.387
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHigh-mobility group (HMG) domain factors {4.1} (TFClass)
TF familyTCF7-related {4.1.3} (TFClass)
TF subfamily {4.1.3.0} (TFClass)
TFClass IDTFClass: 4.1.3.0.5
HGNCHGNC:11535
MGIMGI:1336878
EntrezGene (human)GeneID:6872
(SSTAR profile)
EntrezGene (mouse)GeneID:270627
(SSTAR profile)
UniProt ID (human)TAF1_HUMAN
UniProt ID (mouse)TAF1_MOUSE
UniProt AC (human)P21675
(TFClass)
UniProt AC (mouse)Q80UV9
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 17 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0179.0270.0173.055.0
02395.029.0144.09.0
03408.061.070.038.0
04143.078.0330.026.0
05463.053.045.016.0
0660.054.030.0433.0
0740.07.0507.023.0
081.05.0567.04.0
0981.0482.06.08.0
1055.042.0419.061.0
1134.071.0449.023.0
1288.0386.047.056.0
1383.0112.0294.088.0
1477.0147.0296.057.0
1576.0287.0119.095.0
PFM
ACGT
010.1370.4680.30.095
020.6850.050.250.016
030.7070.1060.1210.066
040.2480.1350.5720.045
050.8020.0920.0780.028
060.1040.0940.0520.75
070.0690.0120.8790.04
080.0020.0090.9830.007
090.140.8350.010.014
100.0950.0730.7260.106
110.0590.1230.7780.04
120.1530.6690.0810.097
130.1440.1940.510.153
140.1330.2550.5130.099
150.1320.4970.2060.165
PWM
ACGT
01-0.5930.6220.18-0.947
021.0-1.562-0.002-2.623
031.033-0.846-0.712-1.304
04-0.009-0.6060.821-1.665
051.159-0.983-1.141-2.115
06-0.862-0.965-1.531.092
07-1.255-2.8321.249-1.78
08-4.031-3.0971.361-3.262
09-0.5691.199-2.956-2.722
10-0.947-1.2081.059-0.846
11-1.41-0.6981.128-1.78
12-0.4870.977-1.099-0.929
13-0.545-0.250.706-0.487
14-0.6180.0190.713-0.912
15-0.6310.682-0.19-0.412
Standard thresholds
P-value Threshold
0.001 4.45451
0.0005 5.31541
0.0001 7.11141