| Motif | SUH.H12INVITRO.0.P.D |
| Gene (human) | RBPJ (GeneCards) |
| Gene synonyms (human) | IGKJRB, IGKJRB1, RBPJK, RBPSUH |
| Gene (mouse) | Rbpj |
| Gene synonyms (mouse) | Igkjrb1, Igkrsbp, Rbpsuh |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SUH.H12INVITRO.0.P.D |
| Gene (human) | RBPJ (GeneCards) |
| Gene synonyms (human) | IGKJRB, IGKJRB1, RBPJK, RBPSUH |
| Gene (mouse) | Rbpj |
| Gene synonyms (mouse) | Igkjrb1, Igkrsbp, Rbpsuh |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | vbYSTGGGAAh |
| GC content | 57.26% |
| Information content (bits; total / per base) | 11.604 / 1.055 |
| Data sources | ChIP-Seq |
| Aligned words | 585 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 21 (128) | 0.712 | 0.916 | 0.61 | 0.841 | 0.71 | 0.922 | 2.241 | 3.818 | 55.023 | 335.721 |
| Mouse | 11 (56) | 0.77 | 0.919 | 0.664 | 0.849 | 0.766 | 0.923 | 2.515 | 4.154 | 72.788 | 344.886 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 1.908 | 1.061 | 0.093 | 0.055 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Rel homology region (RHR) factors {6.1} (TFClass) |
| TF family | CSL-related {6.1.4} (TFClass) |
| TF subfamily | M {6.1.4.1} (TFClass) |
| TFClass ID | TFClass: 6.1.4.1.1 |
| HGNC | HGNC:5724 |
| MGI | MGI:96522 |
| EntrezGene (human) | GeneID:3516 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:19664 (SSTAR profile) |
| UniProt ID (human) | SUH_HUMAN |
| UniProt ID (mouse) | SUH_MOUSE |
| UniProt AC (human) | Q06330 (TFClass) |
| UniProt AC (mouse) | P31266 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 21 human, 11 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SUH.H12INVITRO.0.P.D.pcm |
| PWM | SUH.H12INVITRO.0.P.D.pwm |
| PFM | SUH.H12INVITRO.0.P.D.pfm |
| Alignment | SUH.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | SUH.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SUH.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | SUH.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | SUH.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 218.0 | 110.0 | 185.0 | 72.0 |
| 02 | 45.0 | 217.0 | 233.0 | 90.0 |
| 03 | 14.0 | 355.0 | 76.0 | 140.0 |
| 04 | 66.0 | 178.0 | 330.0 | 11.0 |
| 05 | 9.0 | 8.0 | 3.0 | 565.0 |
| 06 | 0.0 | 1.0 | 583.0 | 1.0 |
| 07 | 66.0 | 3.0 | 490.0 | 26.0 |
| 08 | 3.0 | 2.0 | 580.0 | 0.0 |
| 09 | 580.0 | 0.0 | 4.0 | 1.0 |
| 10 | 500.0 | 5.0 | 72.0 | 8.0 |
| 11 | 215.0 | 181.0 | 69.0 | 120.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.373 | 0.188 | 0.316 | 0.123 |
| 02 | 0.077 | 0.371 | 0.398 | 0.154 |
| 03 | 0.024 | 0.607 | 0.13 | 0.239 |
| 04 | 0.113 | 0.304 | 0.564 | 0.019 |
| 05 | 0.015 | 0.014 | 0.005 | 0.966 |
| 06 | 0.0 | 0.002 | 0.997 | 0.002 |
| 07 | 0.113 | 0.005 | 0.838 | 0.044 |
| 08 | 0.005 | 0.003 | 0.991 | 0.0 |
| 09 | 0.991 | 0.0 | 0.007 | 0.002 |
| 10 | 0.855 | 0.009 | 0.123 | 0.014 |
| 11 | 0.368 | 0.309 | 0.118 | 0.205 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.396 | -0.281 | 0.233 | -0.698 |
| 02 | -1.155 | 0.391 | 0.462 | -0.479 |
| 03 | -2.249 | 0.88 | -0.645 | -0.043 |
| 04 | -0.783 | 0.195 | 0.808 | -2.463 |
| 05 | -2.636 | -2.735 | -3.472 | 1.343 |
| 06 | -4.531 | -4.043 | 1.375 | -4.043 |
| 07 | -0.783 | -3.472 | 1.202 | -1.679 |
| 08 | -3.472 | -3.717 | 1.37 | -4.531 |
| 09 | 1.37 | -4.531 | -3.275 | -4.043 |
| 10 | 1.222 | -3.11 | -0.698 | -2.735 |
| 11 | 0.382 | 0.211 | -0.739 | -0.195 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.19032 |
| 0.0005 | 5.244215 |
| 0.0001 | 7.516845 |