SUH.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SUH.H12CORE.0.P.B
Gene (human)	RBPJ (GeneCards)
Gene synonyms (human)	IGKJRB, IGKJRB1, RBPJK, RBPSUH
Gene (mouse)	Rbpj
Gene synonyms (mouse)	Igkjrb1, Igkrsbp, Rbpsuh
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	vbYSTGGGAAh
GC content	57.26%
Information content (bits; total / per base)	11.604 / 1.055
Data sources	ChIP-Seq
Aligned words	585

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	21 (128)	0.712	0.916	0.61	0.841	0.71	0.922	2.241	3.818	55.023	335.721
Mouse	11 (56)	0.77	0.919	0.664	0.849	0.766	0.923	2.515	4.154	72.788	344.886

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.908	1.061	0.093	0.055

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	Rel homology region (RHR) factors {6.1} (TFClass)
TF family	CSL-related {6.1.4} (TFClass)
TF subfamily	M {6.1.4.1} (TFClass)
TFClass ID	TFClass: 6.1.4.1.1
HGNC	HGNC:5724
MGI	MGI:96522
EntrezGene (human)	GeneID:3516 (SSTAR profile)
EntrezGene (mouse)	GeneID:19664 (SSTAR profile)
UniProt ID (human)	SUH_HUMAN
UniProt ID (mouse)	SUH_MOUSE
UniProt AC (human)	Q06330 (TFClass)
UniProt AC (mouse)	P31266 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	21 human, 11 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	SUH.H12CORE.0.P.B.pcm
PWM	SUH.H12CORE.0.P.B.pwm
PFM	SUH.H12CORE.0.P.B.pfm
Alignment	SUH.H12CORE.0.P.B.words.tsv
Threshold to P-value map	SUH.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	SUH.H12CORE.0.P.B_jaspar_format.txt
MEME format	SUH.H12CORE.0.P.B_meme_format.meme
Transfac format	SUH.H12CORE.0.P.B_transfac_format.txt
Homer format	SUH.H12CORE.0.P.B_homer_format_0.001.txt SUH.H12CORE.0.P.B_homer_format_0.0005.txt SUH.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	218.0	110.0	185.0	72.0
02	45.0	217.0	233.0	90.0
03	14.0	355.0	76.0	140.0
04	66.0	178.0	330.0	11.0
05	9.0	8.0	3.0	565.0
06	0.0	1.0	583.0	1.0
07	66.0	3.0	490.0	26.0
08	3.0	2.0	580.0	0.0
09	580.0	0.0	4.0	1.0
10	500.0	5.0	72.0	8.0
11	215.0	181.0	69.0	120.0

PFM

	A	C	G	T
01	0.373	0.188	0.316	0.123
02	0.077	0.371	0.398	0.154
03	0.024	0.607	0.13	0.239
04	0.113	0.304	0.564	0.019
05	0.015	0.014	0.005	0.966
06	0.0	0.002	0.997	0.002
07	0.113	0.005	0.838	0.044
08	0.005	0.003	0.991	0.0
09	0.991	0.0	0.007	0.002
10	0.855	0.009	0.123	0.014
11	0.368	0.309	0.118	0.205

PWM

	A	C	G	T
01	0.396	-0.281	0.233	-0.698
02	-1.155	0.391	0.462	-0.479
03	-2.249	0.88	-0.645	-0.043
04	-0.783	0.195	0.808	-2.463
05	-2.636	-2.735	-3.472	1.343
06	-4.531	-4.043	1.375	-4.043
07	-0.783	-3.472	1.202	-1.679
08	-3.472	-3.717	1.37	-4.531
09	1.37	-4.531	-3.275	-4.043
10	1.222	-3.11	-0.698	-2.735
11	0.382	0.211	-0.739	-0.195

Standard thresholds

P-value	Threshold
0.001	4.19032
0.0005	5.244215
0.0001	7.516845