MotifSTF1.H12INVIVO.0.PSM.A
Gene (human)NR5A1
(GeneCards)
Gene synonyms (human)AD4BP, FTZF1, SF1
Gene (mouse)Nr5a1
Gene synonyms (mouse)Ftzf1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length12
ConsensusnbbYCAAGGYCR
GC content54.39%
Information content (bits; total / per base)12.734 / 1.061
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (10) 0.732 0.829 0.653 0.817 0.662 0.803 2.419 3.848 12.854 90.658
Mouse 1 (7) 0.845 0.86 0.736 0.762 0.879 0.9 3.961 4.134 53.77 95.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.991 0.985 0.984 0.975 0.96 0.947
best 0.992 0.986 0.984 0.975 0.962 0.949
Methyl HT-SELEX, 1 experiments median 0.991 0.985 0.984 0.975 0.962 0.949
best 0.991 0.985 0.984 0.975 0.962 0.949
Non-Methyl HT-SELEX, 1 experiments median 0.992 0.986 0.984 0.975 0.958 0.944
best 0.992 0.986 0.984 0.975 0.958 0.944
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyFTZF1-related (NR5A) {2.1.5} (TFClass)
TF subfamily {2.1.5.0} (TFClass)
TFClass IDTFClass: 2.1.5.0.1
HGNCHGNC:7983
MGIMGI:1346833
EntrezGene (human)GeneID:2516
(SSTAR profile)
EntrezGene (mouse)GeneID:26423
(SSTAR profile)
UniProt ID (human)STF1_HUMAN
UniProt ID (mouse)STF1_MOUSE
UniProt AC (human)Q13285
(TFClass)
UniProt AC (mouse)P33242
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 1 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01388.0156.0213.0240.0
02141.0189.0477.0190.0
0358.0335.0224.0380.0
0430.0375.022.0570.0
055.0943.043.06.0
06952.030.011.04.0
07945.06.036.010.0
0810.03.0980.04.0
096.011.0978.02.0
1095.0395.022.0485.0
1111.0898.012.076.0
12770.030.0118.079.0
PFM
ACGT
010.3890.1560.2140.241
020.1410.190.4780.191
030.0580.3360.2250.381
040.030.3760.0220.572
050.0050.9460.0430.006
060.9550.030.0110.004
070.9480.0060.0360.01
080.010.0030.9830.004
090.0060.0110.9810.002
100.0950.3960.0220.486
110.0110.9010.0120.076
120.7720.030.1180.079
PWM
ACGT
010.44-0.464-0.156-0.038
02-0.564-0.2750.646-0.269
03-1.4360.294-0.1060.419
04-2.0680.406-2.3590.823
05-3.6191.326-1.725-3.481
061.335-2.068-2.982-3.78
071.328-3.481-1.895-3.064
08-3.064-3.9721.364-3.78
09-3.481-2.9821.362-4.21
10-0.9530.458-2.3590.662
11-2.9821.277-2.906-1.172
121.123-2.068-0.74-1.134
Standard thresholds
P-value Threshold
0.001 3.76056
0.0005 4.86945
0.0001 7.111195