MotifSTAT1.H12INVITRO.0.P.D
Gene (human)STAT1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Stat1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length20
ConsensusvhbbYbhYTTCCYdKMAvhn
GC content44.18%
Information content (bits; total / per base)12.245 / 0.612
Data sourcesChIP-Seq
Aligned words986

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 10 (65) 0.855 0.959 0.769 0.92 0.853 0.952 3.194 4.456 179.886 474.041
Mouse 38 (214) 0.853 0.934 0.763 0.872 0.867 0.941 3.401 4.643 124.28 389.553

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 1.145 0.287 0.025 0.018
TF superclassImmunoglobulin fold {6} (TFClass)
TF classSTAT domain factors {6.2} (TFClass)
TF familySTAT {6.2.1} (TFClass)
TF subfamily {6.2.1.0} (TFClass)
TFClass IDTFClass: 6.2.1.0.1
HGNCHGNC:11362
MGIMGI:103063
EntrezGene (human)GeneID:6772
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)STAT1_HUMAN
UniProt ID (mouse)STAT1_MOUSE
UniProt AC (human)P42224
(TFClass)
UniProt AC (mouse)P42225
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 10 human, 38 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01168.0309.0367.0142.0
02215.0169.0150.0452.0
0381.0211.0208.0486.0
0456.0304.0148.0478.0
0544.0462.093.0387.0
06110.0449.0241.0186.0
07430.0171.0164.0221.0
08102.0190.095.0599.0
093.03.02.0978.0
103.08.04.0971.0
1126.0900.03.057.0
1211.0720.03.0252.0
1365.0424.063.0434.0
14345.072.0427.0142.0
1578.032.0560.0316.0
16717.0180.034.055.0
17885.046.023.032.0
18477.0146.0230.0133.0
19136.0336.0129.0385.0
20166.0353.0283.0184.0
PFM
ACGT
010.170.3130.3720.144
020.2180.1710.1520.458
030.0820.2140.2110.493
040.0570.3080.150.485
050.0450.4690.0940.392
060.1120.4550.2440.189
070.4360.1730.1660.224
080.1030.1930.0960.608
090.0030.0030.0020.992
100.0030.0080.0040.985
110.0260.9130.0030.058
120.0110.730.0030.256
130.0660.430.0640.44
140.350.0730.4330.144
150.0790.0320.5680.32
160.7270.1830.0340.056
170.8980.0470.0230.032
180.4840.1480.2330.135
190.1380.3410.1310.39
200.1680.3580.2870.187
PWM
ACGT
01-0.380.2250.396-0.546
02-0.136-0.374-0.4920.603
03-1.099-0.154-0.1690.675
04-1.4590.208-0.5060.659
05-1.6920.625-0.9630.449
06-0.7980.597-0.022-0.279
070.553-0.363-0.404-0.108
08-0.873-0.258-0.9420.884
09-3.962-3.962-4.21.373
10-3.962-3.24-3.771.366
11-2.1921.29-3.962-1.441
12-2.9711.067-3.9620.022
13-1.3140.539-1.3440.563
140.334-1.2140.546-0.546
15-1.136-1.9960.8170.247
161.063-0.312-1.939-1.476
171.273-1.649-2.307-1.996
180.657-0.519-0.069-0.611
19-0.5890.308-0.6410.443
20-0.3920.3570.137-0.29
Standard thresholds
P-value Threshold
0.001 4.13626
0.0005 5.13391
0.0001 7.16356