| Motif | SRY.H12INVITRO.0.S.B |
| Gene (human) | SRY (GeneCards) |
| Gene synonyms (human) | TDF |
| Gene (mouse) | Sry |
| Gene synonyms (mouse) | Tdf, Tdy |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | SRY.H12INVITRO.0.S.B |
| Gene (human) | SRY (GeneCards) |
| Gene synonyms (human) | TDF |
| Gene (mouse) | Sry |
| Gene synonyms (mouse) | Tdf, Tdy |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 12 |
| Consensus | nhhhCATTSbbn |
| GC content | 38.76% |
| Information content (bits; total / per base) | 9.452 / 0.788 |
| Data sources | HT-SELEX |
| Aligned words | 1534 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.761 | 0.724 | 0.667 | 0.645 | 0.6 | 0.595 |
| best | 0.798 | 0.766 | 0.688 | 0.67 | 0.61 | 0.61 | |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group A {4.1.1.1} (TFClass) |
| TFClass ID | TFClass: 4.1.1.1.1 |
| HGNC | HGNC:11311 |
| MGI | MGI:98660 |
| EntrezGene (human) | GeneID:6736 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:21674 (SSTAR profile) |
| UniProt ID (human) | SRY_HUMAN |
| UniProt ID (mouse) | SRY_MOUSE |
| UniProt AC (human) | Q05066 (TFClass) |
| UniProt AC (mouse) | Q05738 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | SRY.H12INVITRO.0.S.B.pcm |
| PWM | SRY.H12INVITRO.0.S.B.pwm |
| PFM | SRY.H12INVITRO.0.S.B.pfm |
| Alignment | SRY.H12INVITRO.0.S.B.words.tsv |
| Threshold to P-value map | SRY.H12INVITRO.0.S.B.thr |
| Motif in other formats | |
| JASPAR format | SRY.H12INVITRO.0.S.B_jaspar_format.txt |
| MEME format | SRY.H12INVITRO.0.S.B_meme_format.meme |
| Transfac format | SRY.H12INVITRO.0.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 490.5 | 377.5 | 266.5 | 399.5 |
| 02 | 198.25 | 299.25 | 180.25 | 856.25 |
| 03 | 743.0 | 376.0 | 124.0 | 291.0 |
| 04 | 294.0 | 315.0 | 192.0 | 733.0 |
| 05 | 13.0 | 1426.0 | 2.0 | 93.0 |
| 06 | 1439.0 | 28.0 | 58.0 | 9.0 |
| 07 | 0.0 | 1.0 | 0.0 | 1533.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1534.0 |
| 09 | 34.0 | 748.0 | 740.0 | 12.0 |
| 10 | 139.0 | 166.0 | 390.0 | 839.0 |
| 11 | 102.0 | 436.0 | 256.0 | 740.0 |
| 12 | 293.25 | 444.25 | 309.25 | 487.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.32 | 0.246 | 0.174 | 0.26 |
| 02 | 0.129 | 0.195 | 0.118 | 0.558 |
| 03 | 0.484 | 0.245 | 0.081 | 0.19 |
| 04 | 0.192 | 0.205 | 0.125 | 0.478 |
| 05 | 0.008 | 0.93 | 0.001 | 0.061 |
| 06 | 0.938 | 0.018 | 0.038 | 0.006 |
| 07 | 0.0 | 0.001 | 0.0 | 0.999 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.022 | 0.488 | 0.482 | 0.008 |
| 10 | 0.091 | 0.108 | 0.254 | 0.547 |
| 11 | 0.066 | 0.284 | 0.167 | 0.482 |
| 12 | 0.191 | 0.29 | 0.202 | 0.318 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.245 | -0.016 | -0.362 | 0.041 |
| 02 | -0.655 | -0.247 | -0.75 | 0.801 |
| 03 | 0.659 | -0.02 | -1.119 | -0.275 |
| 04 | -0.264 | -0.196 | -0.687 | 0.646 |
| 05 | -3.257 | 1.31 | -4.61 | -1.402 |
| 06 | 1.319 | -2.558 | -1.863 | -3.571 |
| 07 | -5.348 | -4.912 | -5.348 | 1.382 |
| 08 | -5.348 | -5.348 | -5.348 | 1.383 |
| 09 | -2.375 | 0.666 | 0.655 | -3.327 |
| 10 | -1.007 | -0.831 | 0.017 | 0.78 |
| 11 | -1.311 | 0.128 | -0.402 | 0.655 |
| 12 | -0.267 | 0.146 | -0.214 | 0.238 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.12781 |
| 0.0005 | 5.99916 |
| 0.0001 | 7.42184 |