MotifSP9.H12CORE.1.S.C
Gene (human)SP9
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sp9
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length12
ConsensusdRKGGGCGTGKn
GC content71.28%
Information content (bits; total / per base)14.984 / 1.249
Data sourcesHT-SELEX
Aligned words5921

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (14) 0.532 0.557 0.382 0.408 0.534 0.562 1.325 1.511 0.0 0.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.949 0.917 0.914 0.877 0.801 0.786
best 0.949 0.917 0.914 0.877 0.801 0.786

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.527 0.027 0.026 -0.012
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilySp1-like {2.3.1.1} (TFClass)
TFClass IDTFClass: 2.3.1.1.9
HGNCHGNC:30690
MGIMGI:3574660
EntrezGene (human)GeneID:100131390
(SSTAR profile)
EntrezGene (mouse)GeneID:381373
(SSTAR profile)
UniProt ID (human)SP9_HUMAN
UniProt ID (mouse)SP9_MOUSE
UniProt AC (human)P0CG40
(TFClass)
UniProt AC (mouse)Q64HY3
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
011631.0671.02415.01204.0
021348.5168.53744.5659.5
03772.00.02149.03000.0
04192.00.05729.00.0
050.00.05921.00.0
060.00.05921.00.0
070.05921.00.00.0
080.00.05921.00.0
090.00.09.05912.0
10507.00.05094.0320.0
11781.0227.03662.01251.0
12790.51511.51582.52036.5
PFM
ACGT
010.2750.1130.4080.203
020.2280.0280.6320.111
030.130.00.3630.507
040.0320.00.9680.0
050.00.01.00.0
060.00.01.00.0
070.01.00.00.0
080.00.01.00.0
090.00.00.0020.998
100.0860.00.860.054
110.1320.0380.6180.211
120.1340.2550.2670.344
PWM
ACGT
010.097-0.7890.489-0.206
02-0.093-2.1620.927-0.807
03-0.65-6.5260.3720.706
04-2.033-6.5261.352-6.526
05-6.526-6.5261.385-6.526
06-6.526-6.5261.385-6.526
07-6.5261.385-6.526-6.526
08-6.526-6.5261.385-6.526
09-6.526-6.526-4.8881.384
10-1.069-6.5261.235-1.526
11-0.638-1.8670.905-0.168
12-0.6260.0210.0670.319
Standard thresholds
P-value Threshold
0.001 0.28875
0.0005 1.84997
0.0001 6.13342