SP7.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SP7.H12INVITRO.0.P.D
Gene (human)	SP7 (GeneCards)
Gene synonyms (human)	OSX
Gene (mouse)	Sp7
Gene synonyms (mouse)	Osx
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	WAATKRYWKSbTdb
GC content	31.79%
Information content (bits; total / per base)	12.097 / 0.864
Data sources	ChIP-Seq
Aligned words	1004

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.764	0.811	0.676	0.732	0.788	0.83	2.918	3.233	81.056	100.0
Mouse	5 (35)	0.768	0.963	0.733	0.937	0.76	0.959	3.162	4.764	241.538	373.553

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Sp1-like {2.3.1.1} (TFClass)
TFClass ID	TFClass: 2.3.1.1.7
HGNC	HGNC:17321
MGI	MGI:2153568
EntrezGene (human)	GeneID:121340 (SSTAR profile)
EntrezGene (mouse)	GeneID:170574 (SSTAR profile)
UniProt ID (human)	SP7_HUMAN
UniProt ID (mouse)	SP7_MOUSE
UniProt AC (human)	Q8TDD2 (TFClass)
UniProt AC (mouse)	Q8VI67 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 5 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	SP7.H12INVITRO.0.P.D.pcm
PWM	SP7.H12INVITRO.0.P.D.pwm
PFM	SP7.H12INVITRO.0.P.D.pfm
Alignment	SP7.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	SP7.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	SP7.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	SP7.H12INVITRO.0.P.D_meme_format.meme
Transfac format	SP7.H12INVITRO.0.P.D_transfac_format.txt
Homer format	SP7.H12INVITRO.0.P.D_homer_format_0.001.txt SP7.H12INVITRO.0.P.D_homer_format_0.0005.txt SP7.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	347.0	13.0	17.0	627.0
02	901.0	4.0	92.0	7.0
03	997.0	2.0	4.0	1.0
04	38.0	13.0	25.0	928.0
05	100.0	39.0	163.0	702.0
06	755.0	33.0	201.0	15.0
07	51.0	466.0	82.0	405.0
08	734.0	31.0	115.0	124.0
09	91.0	22.0	754.0	137.0
10	62.0	150.0	716.0	76.0
11	24.0	214.0	343.0	423.0
12	44.0	127.0	16.0	817.0
13	240.0	77.0	172.0	515.0
14	89.0	241.0	336.0	338.0

PFM

	A	C	G	T
01	0.346	0.013	0.017	0.625
02	0.897	0.004	0.092	0.007
03	0.993	0.002	0.004	0.001
04	0.038	0.013	0.025	0.924
05	0.1	0.039	0.162	0.699
06	0.752	0.033	0.2	0.015
07	0.051	0.464	0.082	0.403
08	0.731	0.031	0.115	0.124
09	0.091	0.022	0.751	0.136
10	0.062	0.149	0.713	0.076
11	0.024	0.213	0.342	0.421
12	0.044	0.126	0.016	0.814
13	0.239	0.077	0.171	0.513
14	0.089	0.24	0.335	0.337

PWM

	A	C	G	T
01	0.322	-2.843	-2.602	0.911
02	1.273	-3.787	-0.992	-3.366
03	1.374	-4.216	-3.787	-4.529
04	-1.85	-2.843	-2.247	1.303
05	-0.91	-1.825	-0.428	1.024
06	1.097	-1.985	-0.22	-2.715
07	-1.567	0.616	-1.105	0.476
08	1.069	-2.044	-0.772	-0.698
09	-1.003	-2.366	1.095	-0.6
10	-1.378	-0.51	1.044	-1.179
11	-2.285	-0.158	0.31	0.519
12	-1.71	-0.675	-2.657	1.175
13	-0.045	-1.166	-0.375	0.715
14	-1.024	-0.04	0.29	0.296

Standard thresholds

P-value	Threshold
0.001	4.19346
0.0005	5.15831
0.0001	7.14116