MotifSP4.H12INVIVO.2.P.B
Gene (human)SP4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sp4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
B
Motif length21
ConsensusdRRRGGMGGRGvndRRRvdvR
GC content71.02%
Information content (bits; total / per base)15.18 / 0.723
Data sourcesChIP-Seq
Aligned words970

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.689 0.837 0.515 0.669 0.785 0.924 2.952 4.149 7.017 58.398

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.504 0.508 0.498 0.502 0.497 0.5
best 0.505 0.508 0.5 0.502 0.498 0.501
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilySp1-like {2.3.1.1} (TFClass)
TFClass IDTFClass: 2.3.1.1.4
HGNCHGNC:11209
MGIMGI:107595
EntrezGene (human)GeneID:6671
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)SP4_HUMAN
UniProt ID (mouse)SP4_MOUSE
UniProt AC (human)Q02446
(TFClass)
UniProt AC (mouse)Q62445
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01410.094.0279.0187.0
02225.047.0644.054.0
03206.015.0602.0147.0
04261.04.0683.022.0
0512.04.0949.05.0
068.04.0954.04.0
07329.0586.04.051.0
0857.03.0893.017.0
0923.06.0839.0102.0
10335.023.0556.056.0
1192.026.0825.027.0
12227.0482.0173.088.0
13196.0354.0230.0190.0
14245.076.0398.0251.0
15170.060.0642.098.0
16243.074.0620.033.0
17275.086.0573.036.0
18202.0128.0557.083.0
19224.0136.0468.0142.0
20181.0129.0559.0101.0
21216.0101.0580.073.0
PFM
ACGT
010.4230.0970.2880.193
020.2320.0480.6640.056
030.2120.0150.6210.152
040.2690.0040.7040.023
050.0120.0040.9780.005
060.0080.0040.9840.004
070.3390.6040.0040.053
080.0590.0030.9210.018
090.0240.0060.8650.105
100.3450.0240.5730.058
110.0950.0270.8510.028
120.2340.4970.1780.091
130.2020.3650.2370.196
140.2530.0780.410.259
150.1750.0620.6620.101
160.2510.0760.6390.034
170.2840.0890.5910.037
180.2080.1320.5740.086
190.2310.140.4820.146
200.1870.1330.5760.104
210.2230.1040.5980.075
PWM
ACGT
010.522-0.9370.139-0.258
02-0.074-1.6120.972-1.478
03-0.162-2.6820.905-0.496
040.073-3.7541.031-2.332
05-2.879-3.7541.359-3.593
06-3.224-3.7541.364-3.754
070.3030.878-3.754-1.533
08-1.425-3.9461.298-2.569
09-2.29-3.4541.236-0.856
100.321-2.290.826-1.442
11-0.958-2.1761.219-2.14
12-0.0660.683-0.335-1.001
13-0.2110.376-0.053-0.242
140.01-1.1450.4930.034
15-0.352-1.3750.969-0.896
160.002-1.1710.934-1.951
170.125-1.0240.856-1.868
18-0.181-0.6330.828-1.059
19-0.079-0.5730.654-0.53
20-0.29-0.6250.831-0.866
21-0.115-0.8660.868-1.184
Standard thresholds
P-value Threshold
0.001 3.10176
0.0005 4.22921
0.0001 6.58111