MotifSP4.H12INVIVO.0.P.C
Gene (human)SP4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sp4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length15
ConsensusvvKRGGCGKRRYbdv
GC content71.77%
Information content (bits; total / per base)9.653 / 0.644
Data sourcesChIP-Seq
Aligned words868

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.755 0.855 0.607 0.69 0.797 0.888 3.178 3.521 27.101 59.187

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.547 0.546 0.52 0.523 0.511 0.514
best 0.551 0.552 0.522 0.526 0.512 0.515
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilySp1-like {2.3.1.1} (TFClass)
TFClass IDTFClass: 2.3.1.1.4
HGNCHGNC:11209
MGIMGI:107595
EntrezGene (human)GeneID:6671
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)SP4_HUMAN
UniProt ID (mouse)SP4_MOUSE
UniProt AC (human)Q02446
(TFClass)
UniProt AC (mouse)Q62445
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01347.0167.0252.0102.0
02267.0116.0431.054.0
03142.042.0526.0158.0
04162.050.0569.087.0
0533.060.0758.017.0
06108.028.0723.09.0
07103.0703.09.053.0
0847.05.0781.035.0
0933.023.0659.0153.0
10241.041.0516.070.0
11154.054.0587.073.0
1296.0531.0101.0140.0
1386.0494.0123.0165.0
14195.0100.0284.0289.0
15135.0183.0429.0121.0
PFM
ACGT
010.40.1920.290.118
020.3080.1340.4970.062
030.1640.0480.6060.182
040.1870.0580.6560.1
050.0380.0690.8730.02
060.1240.0320.8330.01
070.1190.810.010.061
080.0540.0060.90.04
090.0380.0260.7590.176
100.2780.0470.5940.081
110.1770.0620.6760.084
120.1110.6120.1160.161
130.0990.5690.1420.19
140.2250.1150.3270.333
150.1560.2110.4940.139
PWM
ACGT
010.467-0.260.148-0.746
020.206-0.620.682-1.368
03-0.42-1.6110.881-0.314
04-0.29-1.4420.959-0.902
05-1.841-1.2661.245-2.46
06-0.69-1.9971.198-3.018
07-0.7371.17-3.018-1.386
08-1.502-3.4871.275-1.785
09-1.841-2.1811.106-0.346
100.104-1.6340.862-1.115
11-0.34-1.3680.99-1.074
12-0.8060.89-0.756-0.434
13-0.9140.818-0.562-0.272
14-0.106-0.7660.2670.285
15-0.47-0.1690.678-0.578
Standard thresholds
P-value Threshold
0.001 4.74201
0.0005 5.51466
0.0001 7.12646