MotifSP3.H12INVIVO.0.P.B
Gene (human)SP3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sp3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length19
ConsensusvvvbvnRKGGGCGGGGCYd
GC content78.42%
Information content (bits; total / per base)18.088 / 0.952
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.826 0.844 0.665 0.68 0.903 0.92 3.948 4.189 21.252 47.357
Mouse 9 (45) 0.851 0.926 0.772 0.882 0.88 0.936 4.357 5.095 44.009 95.959

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.762 0.728 0.643 0.639 0.562 0.58
best 0.857 0.811 0.714 0.701 0.596 0.617
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilySp1-like {2.3.1.1} (TFClass)
TFClass IDTFClass: 2.3.1.1.3
HGNCHGNC:11208
MGIMGI:1277166
EntrezGene (human)GeneID:6670
(SSTAR profile)
EntrezGene (mouse)GeneID:20687
(SSTAR profile)
UniProt ID (human)SP3_HUMAN
UniProt ID (mouse)SP3_MOUSE
UniProt AC (human)Q02447
(TFClass)
UniProt AC (mouse)O70494
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 9 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01152.0334.0392.0118.0
02171.0295.0457.073.0
03138.0306.0461.091.0
0493.0239.0522.0142.0
05158.0296.0420.0122.0
06356.0176.0291.0173.0
07255.088.0621.032.0
0896.02.0694.0204.0
09131.01.0861.03.0
105.06.0983.02.0
111.05.0987.03.0
1216.0958.00.022.0
133.01.0988.04.0
144.05.0872.0115.0
15196.04.0786.010.0
1616.020.0950.010.0
1728.0908.09.051.0
1833.0598.082.0283.0
19216.087.0136.0557.0
PFM
ACGT
010.1530.3350.3940.118
020.1720.2960.4590.073
030.1390.3070.4630.091
040.0930.240.5240.143
050.1590.2970.4220.122
060.3570.1770.2920.174
070.2560.0880.6230.032
080.0960.0020.6970.205
090.1320.0010.8640.003
100.0050.0060.9870.002
110.0010.0050.9910.003
120.0160.9620.00.022
130.0030.0010.9920.004
140.0040.0050.8760.115
150.1970.0040.7890.01
160.0160.020.9540.01
170.0280.9120.0090.051
180.0330.60.0820.284
190.2170.0870.1370.559
PWM
ACGT
01-0.4890.2920.451-0.739
02-0.3730.1680.604-1.211
03-0.5850.2050.613-0.995
04-0.973-0.0410.737-0.556
05-0.4510.1720.52-0.706
060.355-0.3440.155-0.361
070.024-1.0280.91-2.006
08-0.942-4.2091.021-0.198
09-0.636-4.5221.236-3.971
10-3.618-3.481.368-4.209
11-4.522-3.6181.372-3.971
12-2.6491.342-4.979-2.358
13-3.971-4.5221.373-3.779
14-3.779-3.6181.248-0.765
15-0.237-3.7791.145-3.063
16-2.649-2.4461.334-3.063
17-2.1321.289-3.152-1.559
18-1.9770.872-1.0970.127
19-0.141-1.039-0.5990.801
Standard thresholds
P-value Threshold
0.001 1.06821
0.0005 2.47301
0.0001 5.42541