| Motif | SP2.H12RSNP.0.P.D |
| Gene (human) | SP2 (GeneCards) |
| Gene synonyms (human) | KIAA0048 |
| Gene (mouse) | Sp2 |
| Gene synonyms (mouse) | Kiaa0048 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SP2.H12RSNP.0.P.D |
| Gene (human) | SP2 (GeneCards) |
| Gene synonyms (human) | KIAA0048 |
| Gene (mouse) | Sp2 |
| Gene synonyms (mouse) | Kiaa0048 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | dRRGGGCGGGRM |
| GC content | 79.15% |
| Information content (bits; total / per base) | 13.708 / 1.142 |
| Data sources | ChIP-Seq |
| Aligned words | 498 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (33) | 0.73 | 0.895 | 0.559 | 0.775 | 0.806 | 0.921 | 2.761 | 3.643 | 22.398 | 126.268 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 1.438 | 1.428 | 0.048 | 0.027 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
| TF subfamily | Sp1-like {2.3.1.1} (TFClass) |
| TFClass ID | TFClass: 2.3.1.1.2 |
| HGNC | HGNC:11207 |
| MGI | MGI:1926162 |
| EntrezGene (human) | GeneID:6668 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:78912 (SSTAR profile) |
| UniProt ID (human) | SP2_HUMAN |
| UniProt ID (mouse) | SP2_MOUSE |
| UniProt AC (human) | Q02086 (TFClass) |
| UniProt AC (mouse) | Q9D2H6 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SP2.H12RSNP.0.P.D.pcm |
| PWM | SP2.H12RSNP.0.P.D.pwm |
| PFM | SP2.H12RSNP.0.P.D.pfm |
| Alignment | SP2.H12RSNP.0.P.D.words.tsv |
| Threshold to P-value map | SP2.H12RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SP2.H12RSNP.0.P.D_jaspar_format.txt |
| MEME format | SP2.H12RSNP.0.P.D_meme_format.meme |
| Transfac format | SP2.H12RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 224.0 | 41.0 | 172.0 | 61.0 |
| 02 | 129.0 | 16.0 | 333.0 | 20.0 |
| 03 | 75.0 | 3.0 | 368.0 | 52.0 |
| 04 | 178.0 | 0.0 | 320.0 | 0.0 |
| 05 | 2.0 | 2.0 | 494.0 | 0.0 |
| 06 | 1.0 | 2.0 | 493.0 | 2.0 |
| 07 | 79.0 | 385.0 | 0.0 | 34.0 |
| 08 | 11.0 | 6.0 | 470.0 | 11.0 |
| 09 | 3.0 | 1.0 | 483.0 | 11.0 |
| 10 | 49.0 | 10.0 | 410.0 | 29.0 |
| 11 | 114.0 | 17.0 | 345.0 | 22.0 |
| 12 | 119.0 | 320.0 | 39.0 | 20.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.45 | 0.082 | 0.345 | 0.122 |
| 02 | 0.259 | 0.032 | 0.669 | 0.04 |
| 03 | 0.151 | 0.006 | 0.739 | 0.104 |
| 04 | 0.357 | 0.0 | 0.643 | 0.0 |
| 05 | 0.004 | 0.004 | 0.992 | 0.0 |
| 06 | 0.002 | 0.004 | 0.99 | 0.004 |
| 07 | 0.159 | 0.773 | 0.0 | 0.068 |
| 08 | 0.022 | 0.012 | 0.944 | 0.022 |
| 09 | 0.006 | 0.002 | 0.97 | 0.022 |
| 10 | 0.098 | 0.02 | 0.823 | 0.058 |
| 11 | 0.229 | 0.034 | 0.693 | 0.044 |
| 12 | 0.239 | 0.643 | 0.078 | 0.04 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.582 | -1.086 | 0.32 | -0.701 |
| 02 | 0.035 | -1.971 | 0.976 | -1.766 |
| 03 | -0.499 | -3.321 | 1.076 | -0.856 |
| 04 | 0.354 | -4.397 | 0.936 | -4.397 |
| 05 | -3.569 | -3.569 | 1.369 | -4.397 |
| 06 | -3.9 | -3.569 | 1.367 | -3.569 |
| 07 | -0.448 | 1.121 | -4.397 | -1.266 |
| 08 | -2.307 | -2.815 | 1.319 | -2.307 |
| 09 | -3.321 | -3.9 | 1.347 | -2.307 |
| 10 | -0.914 | -2.39 | 1.183 | -1.417 |
| 11 | -0.087 | -1.916 | 1.011 | -1.677 |
| 12 | -0.045 | 0.936 | -1.134 | -1.766 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.517675 |
| 0.0005 | 4.65409 |
| 0.0001 | 6.962235 |