SP2.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SP2.H12INVIVO.1.P.B
Gene (human)	SP2 (GeneCards)
Gene synonyms (human)	KIAA0048
Gene (mouse)	Sp2
Gene synonyms (mouse)	Kiaa0048
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	21
Consensus	SvbvvRGRGGCGGGRMbdvvR
GC content	77.8%
Information content (bits; total / per base)	15.984 / 0.761
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (33)	0.69	0.854	0.479	0.694	0.81	0.914	3.131	4.104	18.367	92.886

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.204	0.55	0.029	0.025

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Sp1-like {2.3.1.1} (TFClass)
TFClass ID	TFClass: 2.3.1.1.2
HGNC	HGNC:11207
MGI	MGI:1926162
EntrezGene (human)	GeneID:6668 (SSTAR profile)
EntrezGene (mouse)	GeneID:78912 (SSTAR profile)
UniProt ID (human)	SP2_HUMAN
UniProt ID (mouse)	SP2_MOUSE
UniProt AC (human)	Q02086 (TFClass)
UniProt AC (mouse)	Q9D2H6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	SP2.H12INVIVO.1.P.B.pcm
PWM	SP2.H12INVIVO.1.P.B.pwm
PFM	SP2.H12INVIVO.1.P.B.pfm
Alignment	SP2.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	SP2.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	SP2.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	SP2.H12INVIVO.1.P.B_meme_format.meme
Transfac format	SP2.H12INVIVO.1.P.B_transfac_format.txt
Homer format	SP2.H12INVIVO.1.P.B_homer_format_0.001.txt SP2.H12INVIVO.1.P.B_homer_format_0.0005.txt SP2.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	142.0	253.0	556.0	49.0
02	161.0	284.0	484.0	71.0
03	103.0	196.0	579.0	122.0
04	186.0	193.0	511.0	110.0
05	385.0	210.0	309.0	96.0
06	251.0	64.0	638.0	47.0
07	105.0	14.0	828.0	53.0
08	281.0	20.0	693.0	6.0
09	23.0	8.0	964.0	5.0
10	11.0	12.0	972.0	5.0
11	78.0	857.0	2.0	63.0
12	14.0	16.0	959.0	11.0
13	16.0	6.0	957.0	21.0
14	128.0	17.0	822.0	33.0
15	214.0	86.0	677.0	23.0
16	147.0	677.0	103.0	73.0
17	145.0	398.0	250.0	207.0
18	213.0	144.0	381.0	262.0
19	227.0	215.0	482.0	76.0
20	194.0	210.0	553.0	43.0
21	214.0	169.0	568.0	49.0

PFM

	A	C	G	T
01	0.142	0.253	0.556	0.049
02	0.161	0.284	0.484	0.071
03	0.103	0.196	0.579	0.122
04	0.186	0.193	0.511	0.11
05	0.385	0.21	0.309	0.096
06	0.251	0.064	0.638	0.047
07	0.105	0.014	0.828	0.053
08	0.281	0.02	0.693	0.006
09	0.023	0.008	0.964	0.005
10	0.011	0.012	0.972	0.005
11	0.078	0.857	0.002	0.063
12	0.014	0.016	0.959	0.011
13	0.016	0.006	0.957	0.021
14	0.128	0.017	0.822	0.033
15	0.214	0.086	0.677	0.023
16	0.147	0.677	0.103	0.073
17	0.145	0.398	0.25	0.207
18	0.213	0.144	0.381	0.262
19	0.227	0.215	0.482	0.076
20	0.194	0.21	0.553	0.043
21	0.214	0.169	0.568	0.049

PWM

	A	C	G	T
01	-0.56	0.012	0.796	-1.602
02	-0.436	0.127	0.657	-1.242
03	-0.877	-0.241	0.836	-0.71
04	-0.293	-0.257	0.711	-0.812
05	0.429	-0.173	0.211	-0.946
06	0.004	-1.343	0.933	-1.642
07	-0.858	-2.773	1.193	-1.526
08	0.116	-2.45	1.015	-3.484
09	-2.32	-3.253	1.345	-3.622
10	-2.985	-2.909	1.353	-3.622
11	-1.15	1.227	-4.213	-1.358
12	-2.773	-2.653	1.339	-2.985
13	-2.653	-3.484	1.337	-2.405
14	-0.663	-2.598	1.185	-1.981
15	-0.154	-1.054	0.992	-2.32
16	-0.526	0.992	-0.877	-1.215
17	-0.54	0.462	0.0	-0.187
18	-0.159	-0.547	0.419	0.047
19	-0.096	-0.15	0.653	-1.175
20	-0.252	-0.173	0.79	-1.728
21	-0.154	-0.388	0.817	-1.602

Standard thresholds

P-value	Threshold
0.001	2.76971
0.0005	3.92521
0.0001	6.35631