MotifSP2.H12INVIVO.0.P.D
Gene (human)SP2
(GeneCards)
Gene synonyms (human)KIAA0048
Gene (mouse)Sp2
Gene synonyms (mouse)Kiaa0048
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusdRRGGGCGGGRM
GC content79.15%
Information content (bits; total / per base)13.708 / 1.142
Data sourcesChIP-Seq
Aligned words498

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (33) 0.73 0.895 0.559 0.775 0.806 0.921 2.761 3.643 22.398 126.268

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 1.438 1.428 0.048 0.027
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilySp1-like {2.3.1.1} (TFClass)
TFClass IDTFClass: 2.3.1.1.2
HGNCHGNC:11207
MGIMGI:1926162
EntrezGene (human)GeneID:6668
(SSTAR profile)
EntrezGene (mouse)GeneID:78912
(SSTAR profile)
UniProt ID (human)SP2_HUMAN
UniProt ID (mouse)SP2_MOUSE
UniProt AC (human)Q02086
(TFClass)
UniProt AC (mouse)Q9D2H6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01224.041.0172.061.0
02129.016.0333.020.0
0375.03.0368.052.0
04178.00.0320.00.0
052.02.0494.00.0
061.02.0493.02.0
0779.0385.00.034.0
0811.06.0470.011.0
093.01.0483.011.0
1049.010.0410.029.0
11114.017.0345.022.0
12119.0320.039.020.0
PFM
ACGT
010.450.0820.3450.122
020.2590.0320.6690.04
030.1510.0060.7390.104
040.3570.00.6430.0
050.0040.0040.9920.0
060.0020.0040.990.004
070.1590.7730.00.068
080.0220.0120.9440.022
090.0060.0020.970.022
100.0980.020.8230.058
110.2290.0340.6930.044
120.2390.6430.0780.04
PWM
ACGT
010.582-1.0860.32-0.701
020.035-1.9710.976-1.766
03-0.499-3.3211.076-0.856
040.354-4.3970.936-4.397
05-3.569-3.5691.369-4.397
06-3.9-3.5691.367-3.569
07-0.4481.121-4.397-1.266
08-2.307-2.8151.319-2.307
09-3.321-3.91.347-2.307
10-0.914-2.391.183-1.417
11-0.087-1.9161.011-1.677
12-0.0450.936-1.134-1.766
Standard thresholds
P-value Threshold
0.001 3.517675
0.0005 4.65409
0.0001 6.962235