Motif | SP2.H12CORE.1.P.B |
Gene (human) | SP2 (GeneCards) |
Gene synonyms (human) | KIAA0048 |
Gene (mouse) | Sp2 |
Gene synonyms (mouse) | Kiaa0048 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | SP2.H12CORE.1.P.B |
Gene (human) | SP2 (GeneCards) |
Gene synonyms (human) | KIAA0048 |
Gene (mouse) | Sp2 |
Gene synonyms (mouse) | Kiaa0048 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 21 |
Consensus | vvnbnnvdRGGMKGRvvnnvv |
GC content | 68.62% |
Information content (bits; total / per base) | 9.513 / 0.453 |
Data sources | ChIP-Seq |
Aligned words | 864 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 5 (33) | 0.693 | 0.873 | 0.476 | 0.729 | 0.807 | 0.915 | 2.942 | 4.042 | 20.62 | 127.252 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 1.275 | 0.802 | 0.046 | 0.024 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
TF subfamily | Sp1-like {2.3.1.1} (TFClass) |
TFClass ID | TFClass: 2.3.1.1.2 |
HGNC | HGNC:11207 |
MGI | MGI:1926162 |
EntrezGene (human) | GeneID:6668 (SSTAR profile) |
EntrezGene (mouse) | GeneID:78912 (SSTAR profile) |
UniProt ID (human) | SP2_HUMAN |
UniProt ID (mouse) | SP2_MOUSE |
UniProt AC (human) | Q02086 (TFClass) |
UniProt AC (mouse) | Q9D2H6 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 5 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | SP2.H12CORE.1.P.B.pcm |
PWM | SP2.H12CORE.1.P.B.pwm |
PFM | SP2.H12CORE.1.P.B.pfm |
Alignment | SP2.H12CORE.1.P.B.words.tsv |
Threshold to P-value map | SP2.H12CORE.1.P.B.thr |
Motif in other formats | |
JASPAR format | SP2.H12CORE.1.P.B_jaspar_format.txt |
MEME format | SP2.H12CORE.1.P.B_meme_format.meme |
Transfac format | SP2.H12CORE.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 166.0 | 335.0 | 259.0 | 104.0 |
02 | 198.0 | 286.0 | 281.0 | 99.0 |
03 | 172.0 | 236.0 | 298.0 | 158.0 |
04 | 128.0 | 261.0 | 332.0 | 143.0 |
05 | 160.0 | 296.0 | 269.0 | 139.0 |
06 | 275.0 | 180.0 | 289.0 | 120.0 |
07 | 258.0 | 158.0 | 387.0 | 61.0 |
08 | 227.0 | 39.0 | 468.0 | 130.0 |
09 | 283.0 | 30.0 | 528.0 | 23.0 |
10 | 109.0 | 2.0 | 744.0 | 9.0 |
11 | 25.0 | 0.0 | 837.0 | 2.0 |
12 | 171.0 | 635.0 | 0.0 | 58.0 |
13 | 72.0 | 30.0 | 687.0 | 75.0 |
14 | 44.0 | 29.0 | 747.0 | 44.0 |
15 | 217.0 | 49.0 | 512.0 | 86.0 |
16 | 215.0 | 128.0 | 446.0 | 75.0 |
17 | 167.0 | 395.0 | 198.0 | 104.0 |
18 | 149.0 | 303.0 | 216.0 | 196.0 |
19 | 201.0 | 155.0 | 297.0 | 211.0 |
20 | 213.0 | 179.0 | 375.0 | 97.0 |
21 | 199.0 | 171.0 | 383.0 | 111.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.192 | 0.388 | 0.3 | 0.12 |
02 | 0.229 | 0.331 | 0.325 | 0.115 |
03 | 0.199 | 0.273 | 0.345 | 0.183 |
04 | 0.148 | 0.302 | 0.384 | 0.166 |
05 | 0.185 | 0.343 | 0.311 | 0.161 |
06 | 0.318 | 0.208 | 0.334 | 0.139 |
07 | 0.299 | 0.183 | 0.448 | 0.071 |
08 | 0.263 | 0.045 | 0.542 | 0.15 |
09 | 0.328 | 0.035 | 0.611 | 0.027 |
10 | 0.126 | 0.002 | 0.861 | 0.01 |
11 | 0.029 | 0.0 | 0.969 | 0.002 |
12 | 0.198 | 0.735 | 0.0 | 0.067 |
13 | 0.083 | 0.035 | 0.795 | 0.087 |
14 | 0.051 | 0.034 | 0.865 | 0.051 |
15 | 0.251 | 0.057 | 0.593 | 0.1 |
16 | 0.249 | 0.148 | 0.516 | 0.087 |
17 | 0.193 | 0.457 | 0.229 | 0.12 |
18 | 0.172 | 0.351 | 0.25 | 0.227 |
19 | 0.233 | 0.179 | 0.344 | 0.244 |
20 | 0.247 | 0.207 | 0.434 | 0.112 |
21 | 0.23 | 0.198 | 0.443 | 0.128 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.261 | 0.436 | 0.18 | -0.723 |
02 | -0.086 | 0.279 | 0.261 | -0.771 |
03 | -0.226 | 0.088 | 0.32 | -0.31 |
04 | -0.518 | 0.188 | 0.427 | -0.408 |
05 | -0.297 | 0.313 | 0.218 | -0.437 |
06 | 0.24 | -0.181 | 0.289 | -0.582 |
07 | 0.176 | -0.31 | 0.58 | -1.245 |
08 | 0.049 | -1.677 | 0.769 | -0.503 |
09 | 0.268 | -1.927 | 0.889 | -2.177 |
10 | -0.676 | -4.077 | 1.231 | -3.014 |
11 | -2.099 | -4.858 | 1.349 | -4.077 |
12 | -0.232 | 1.073 | -4.858 | -1.294 |
13 | -1.083 | -1.927 | 1.152 | -1.043 |
14 | -1.561 | -1.959 | 1.235 | -1.561 |
15 | 0.005 | -1.457 | 0.859 | -0.909 |
16 | -0.005 | -0.518 | 0.721 | -1.043 |
17 | -0.255 | 0.6 | -0.086 | -0.723 |
18 | -0.368 | 0.336 | 0.0 | -0.096 |
19 | -0.071 | -0.329 | 0.316 | -0.023 |
20 | -0.014 | -0.186 | 0.548 | -0.791 |
21 | -0.081 | -0.232 | 0.569 | -0.658 |
P-value | Threshold |
---|---|
0.001 | 4.84341 |
0.0005 | 5.62046 |
0.0001 | 7.19881 |