| Motif | SOX6.H12RSNP.0.P.D |
| Gene (human) | SOX6 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox6 |
| Gene synonyms (mouse) | Sox-6 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SOX6.H12RSNP.0.P.D |
| Gene (human) | SOX6 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox6 |
| Gene synonyms (mouse) | Sox-6 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | bYWTTGTYbh |
| GC content | 38.97% |
| Information content (bits; total / per base) | 10.129 / 1.013 |
| Data sources | ChIP-Seq |
| Aligned words | 993 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (11) | 0.758 | 0.851 | 0.621 | 0.765 | 0.787 | 0.881 | 2.313 | 3.308 | 64.658 | 113.409 |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group D {4.1.1.4} (TFClass) |
| TFClass ID | TFClass: 4.1.1.4.2 |
| HGNC | HGNC:16421 |
| MGI | MGI:98368 |
| EntrezGene (human) | GeneID:55553 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20679 (SSTAR profile) |
| UniProt ID (human) | SOX6_HUMAN |
| UniProt ID (mouse) | SOX6_MOUSE |
| UniProt AC (human) | P35712 (TFClass) |
| UniProt AC (mouse) | P40645 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SOX6.H12RSNP.0.P.D.pcm |
| PWM | SOX6.H12RSNP.0.P.D.pwm |
| PFM | SOX6.H12RSNP.0.P.D.pfm |
| Alignment | SOX6.H12RSNP.0.P.D.words.tsv |
| Threshold to P-value map | SOX6.H12RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SOX6.H12RSNP.0.P.D_jaspar_format.txt |
| MEME format | SOX6.H12RSNP.0.P.D_meme_format.meme |
| Transfac format | SOX6.H12RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 45.0 | 534.0 | 181.0 | 233.0 |
| 02 | 57.0 | 701.0 | 18.0 | 217.0 |
| 03 | 623.0 | 28.0 | 8.0 | 334.0 |
| 04 | 2.0 | 17.0 | 36.0 | 938.0 |
| 05 | 5.0 | 2.0 | 5.0 | 981.0 |
| 06 | 4.0 | 33.0 | 938.0 | 18.0 |
| 07 | 3.0 | 5.0 | 5.0 | 980.0 |
| 08 | 10.0 | 307.0 | 118.0 | 558.0 |
| 09 | 107.0 | 447.0 | 116.0 | 323.0 |
| 10 | 136.0 | 254.0 | 117.0 | 486.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.045 | 0.538 | 0.182 | 0.235 |
| 02 | 0.057 | 0.706 | 0.018 | 0.219 |
| 03 | 0.627 | 0.028 | 0.008 | 0.336 |
| 04 | 0.002 | 0.017 | 0.036 | 0.945 |
| 05 | 0.005 | 0.002 | 0.005 | 0.988 |
| 06 | 0.004 | 0.033 | 0.945 | 0.018 |
| 07 | 0.003 | 0.005 | 0.005 | 0.987 |
| 08 | 0.01 | 0.309 | 0.119 | 0.562 |
| 09 | 0.108 | 0.45 | 0.117 | 0.325 |
| 10 | 0.137 | 0.256 | 0.118 | 0.489 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.677 | 0.762 | -0.313 | -0.063 |
| 02 | -1.448 | 1.034 | -2.539 | -0.134 |
| 03 | 0.916 | -2.129 | -3.247 | 0.295 |
| 04 | -4.206 | -2.591 | -1.891 | 1.324 |
| 05 | -3.616 | -4.206 | -3.616 | 1.369 |
| 06 | -3.776 | -1.974 | 1.324 | -2.539 |
| 07 | -3.968 | -3.616 | -3.616 | 1.368 |
| 08 | -3.06 | 0.211 | -0.736 | 0.806 |
| 09 | -0.833 | 0.585 | -0.753 | 0.262 |
| 10 | -0.596 | 0.023 | -0.745 | 0.668 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.689655 |
| 0.0005 | 5.685455 |
| 0.0001 | 7.54869 |